Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3417 bp · LXL04_025673|LXL04_025673|OH1004|cDNA
ATGAACACGGCCAAAATGGAGAACAACACGCCACCGGCGCCGGCGCTGGCGCCGACACCACTGAAACCCCTGACACCGCTAGAGTGGGAGTCCTTAATTGACGACCACCAGTTCGGAGGTTTCCGCCGTGACCGTTGGATCTCACTGAACTACACTGGTATCTCTCTTTTCGACCTCTGTCTATCCTCCATCCTCCGCAAAGATCTCTCACTCAATCTCAAGCTCCACCTCATCGTTTTCCTTGAAGAATACTTCACCTC...
3417 bp · LXL04_025673|LXL04_025673|OH1004|CDS
ATGAACACGGCCAAAATGGAGAACAACACGCCACCGGCGCCGGCGCTGGCGCCGACACCACTGAAACCCCTGACACCGCTAGAGTGGGAGTCCTTAATTGACGACCACCAGTTCGGAGGTTTCCGCCGTGACCGTTGGATCTCACTGAACTACACTGGTATCTCTCTTTTCGACCTCTGTCTATCCTCCATCCTCCGCAAAGATCTCTCACTCAATCTCAAGCTCCACCTCATCGTTTTCCTTGAAGAATACTTCACCTC...
Protein
Download Protein FASTA1138 aa · LXL04_025673|LXL04_025673|OH1004|PROTEIN
MNTAKMENNTPPAPALAPTPLKPLTPLEWESLIDDHQFGGFRRDRWISLNYTGISLFDLCLSSILRKDLSLNLKLHLIVFLEEYFTSFFPVPESDTETEKTLARFLETLRSLINAPVDGVSVTYSLKEQLLVSTTSIFILFTIDNSDDSKTPNLTYTSQLEGLIEVLLTIINRPNHGVDRLLRGAACECLRELERECPSLLSETAGHLWQLCQSEKTHVAQSYVLMLANVVHGIVTSKVNASVLSTSIPLIPFNVPQFLN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_025673 |
|---|---|
| TK1151 ID | TkA06G046180 |
| OH-1004 ID | LXL04_025673 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_025673 |
|---|---|
| Location | Chr05:115069718-115073376 (+) |
| Description | Similar to ap5b1: AP-5 complex subunit beta-1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0015031 protein transport Biological Process GO:0016197 endosomal transport Biological Process GO:0030119 AP-type membrane coat adaptor complex Cellular Component |
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF21588.4AP5B1_middle273-670 aaPF21590.3AP5B1_C1086-1134 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_025673 | PF21588.4 | AP5B1_middle | 273 | 670 | 1e-23 | 85.0 |
| LXL04_025673 | PF21590.3 | AP5B1_C | 1086 | 1134 | 1.2e-09 | 39.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.