LXL04_025666 | RubberDandelionOmics

Gene overview

LXL04_025666

Reference: OH-1004 Chr: Chr05 Coordinates: 114902102-114905526 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1701 bp · LXL04_025666|LXL04_025666|OH1004|cDNA

ATGGCAGAACTCTGTGATTTGCAGGTCCATATCAATGGTCAACAAACATTCTATCTCCACGAGAAAACAATATCAAGATTCTCGGGGAAGTTAAGGAAGATGATTaagaaagaaaagagaaaaACCCAGATCAGAAAAACCGGAATCGAGATCAATGATTTCCCTGGTGGCTCAGATGGGTTTGAATTGTTTTCAAGATTCTGCTACAACAATGGCGAAATCAACATCTCCGTATGCAATGTCTCTCTCCTCCATTGTTG...

CDS

Download CDS FASTA

1701 bp · LXL04_025666|LXL04_025666|OH1004|CDS

ATGGCAGAACTCTGTGATTTGCAGGTCCATATCAATGGTCAACAAACATTCTATCTCCACGAGAAAACAATATCAAGATTCTCGGGGAAGTTAAGGAAGATGATTAAGAAAGAAAAGAGAAAAACCCAGATCAGAAAAACCGGAATCGAGATCAATGATTTCCCTGGTGGCTCAGATGGGTTTGAATTGTTTTCAAGATTCTGCTACAACAATGGCGAAATCAACATCTCCGTATGCAATGTCTCTCTCCTCCATTGTTG...

Protein

Download Protein FASTA

566 aa · LXL04_025666|LXL04_025666|OH1004|PROTEIN

MAELCDLQVHINGQQTFYLHEKTISRFSGKLRKMIKKEKRKTQIRKTGIEINDFPGGSDGFELFSRFCYNNGEINISVCNVSLLHCCAVFLAMNDTLLPKTTDVFNRMFDWSLTDVIICLKNCTPFITYADSTGIIEKLISSLIIKITQNSDSNSISTNLFPSSSSSSSPESTVKSCTLLRLSSCSSTKGLFWFDDMAVLPPAIIERFVKALGAYGNENNSLVVTRFLLHYLKTACQSKTQSFSKCDYGGLADTAVYGVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025666`
TK1151 ID	TkA06G047000
OH-1004 ID	LXL04_025666
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 80.903 / OH-1004 69.611 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025666

Location Chr05:114902102-114905526 (-)

Description Similar to At3g19850: BTB/POZ domain-containing protein At3g19850

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19850`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g50280`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At3g22104`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g03250`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g30440`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025666 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0031463 Cul3-RING ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT1G30440

ath:AT1G50280

ath:AT3G19850

ath:AT3G22104

ath:AT5G03250

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.863

Rank 1 · LXL04_025666 · OH-1004

Cytoplasm0.155

Rank 2 · LXL04_025666 · OH-1004

Cell membrane0.055

Rank 3 · LXL04_025666 · OH-1004

Endoplasmic reticulum0.030

Rank 4 · LXL04_025666 · OH-1004

Plastid0.019

Rank 5 · LXL04_025666 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03000.20NPH3192-421 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025666	`PF03000.20`	NPH3	192	421	3.4e-57	194.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LT24`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g19850	46.453%	Swiss-Prot	moderate database homology
`Q8RXR6`	Arabidopsis thaliana	BTB/POZ domain-containing protein At1g50280	52.026%	Swiss-Prot	strong database homology
`Q9C5J4`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g22104	30.836%	Swiss-Prot	moderate database homology
`Q9LYW0`	Arabidopsis thaliana	BTB/POZ domain-containing protein At5g03250	29.038%	Swiss-Prot	weak database homology
`Q9S9Q9`	Arabidopsis thaliana	BTB/POZ domain-containing protein At1g30440	28.014%	Swiss-Prot	weak database homology

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