LXL04_025640 | RubberDandelionOmics

Gene overview

LXL04_025640

Reference: OH-1004 Chr: Chr05 Coordinates: 114638039-114638998 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

723 bp · LXL04_025640|LXL04_025640|OH1004|cDNA

ATGCCGAGCCTAATCACTCGCAATTTGAGCAAGCTATGGAGCGGAGTAGCGAAGACTCCAATCATGGCAAACCAACGGAGTTCCTACAGTCTAATACCCATGGTCATCGAGCACTCGTCGCGAGGAGAGAGAGCCTACGACATCTTCTCCCGACTACTCAAAGAGAGAATCATATGTATAAACGGGCCCATAGCCGATGATACAGCACACGTCGTCGTTGCTCAGCTCCTCTTCCTTGAATCTGAGAACCCTTCCAAACC...

CDS

Download CDS FASTA

723 bp · LXL04_025640|LXL04_025640|OH1004|CDS

ATGCCGAGCCTAATCACTCGCAATTTGAGCAAGCTATGGAGCGGAGTAGCGAAGACTCCAATCATGGCAAACCAACGGAGTTCCTACAGTCTAATACCCATGGTCATCGAGCACTCGTCGCGAGGAGAGAGAGCCTACGACATCTTCTCCCGACTACTCAAAGAGAGAATCATATGTATAAACGGGCCCATAGCCGATGATACAGCACACGTCGTCGTTGCTCAGCTCCTCTTCCTTGAATCTGAGAACCCTTCCAAACC...

Protein

Download Protein FASTA

240 aa · LXL04_025640|LXL04_025640|OH1004|PROTEIN

MPSLITRNLSKLWSGVAKTPIMANQRSSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIADDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDMTIHTKQIVRVWDSLNALYAKHTGQSVDVIEKNMDRDYFMTPQEAKEFGIIDEVIDERPLTLVTDAIGSDGKGKVSE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025640`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025640

Location Chr05:114638039-114638998 (+)

Description Similar to CLPP2: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23140`	Component of the mitochondrial ATP-dependent Clp protease.	Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease.2001 · DOI: 10.1023/a:1010677220323

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025640 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009368 endopeptidase Clp complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009532 plastid stroma Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009840 chloroplastic endopeptidase Clp complex Cellular Component

KEGG gene cross-reference

ath:AT5G23140

bbk:BARBAKC583_0546

bhe:BH05880

bqu:BQ05040

btr:BT_0876

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.944

Rank 1 · LXL04_025640 · OH-1004

Cytoplasm0.052

Rank 2 · LXL04_025640 · OH-1004

Nucleus0.047

Rank 3 · LXL04_025640 · OH-1004

Cell membrane0.023

Rank 4 · LXL04_025640 · OH-1004

Plastid0.021

Rank 5 · LXL04_025640 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00574.29CLP_protease41-220 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025640	`PF00574.29`	CLP_protease	41	220	7.2e-82	274.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN42`	Arabidopsis thaliana	ATP-dependent Clp protease proteolytic subunit 2, mitochondrial	84.862%	Swiss-Prot	strong database homology

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