LXL04_025615 | RubberDandelionOmics

Gene overview

LXL04_025615

Reference: OH-1004 Chr: Chr05 Coordinates: 114333529-114335379 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

849 bp · LXL04_025615|LXL04_025615|OH1004|cDNA

ATGGATAACAGATTCTCAAAACATGATACAGGAGTTGCAATCAAATCAACAAGGGGACTACTCTTATCTAAACCTTACGATCCCCTTTCCGCCACTTCTTCAAAGAACAATGGCATTAAAAGAGAAGCAAGTTCAGGGCCCAAACTAATCGAAACAATAAAAGAGATTTTGAATCTTGGGGCACAAATGATTCAAGTTGGCAGCCAAAGAAAAATCTTCAGGAAAACCTTCGGTATTAGAGAGGGAGAAAAGTTATTGAA...

CDS

Download CDS FASTA

849 bp · LXL04_025615|LXL04_025615|OH1004|CDS

ATGGATAACAGATTCTCAAAACATGATACAGGAGTTGCAATCAAATCAACAAGGGGACTACTCTTATCTAAACCTTACGATCCCCTTTCCGCCACTTCTTCAAAGAACAATGGCATTAAAAGAGAAGCAAGTTCAGGGCCCAAACTAATCGAAACAATAAAAGAGATTTTGAATCTTGGGGCACAAATGATTCAAGTTGGCAGCCAAAGAAAAATCTTCAGGAAAACCTTCGGTATTAGAGAGGGAGAAAAGTTATTGAA...

Protein

Download Protein FASTA

282 aa · LXL04_025615|LXL04_025615|OH1004|PROTEIN

MDNRFSKHDTGVAIKSTRGLLLSKPYDPLSATSSKNNGIKREASSGPKLIETIKEILNLGAQMIQVGSQRKIFRKTFGIREGEKLLKASQCNLYTTAGAIAGILFVSTERVAFCSYKSIEAYSTTGKLINFQYKVSIPLGKIKGSGCVKASEGASAGGCVGSAEGRRERRVRDSSKQKDEARHRKGHFRPVLRSLGRIVVVAGRVPVVTTEVTGEHRCILWLLVVITRKKQHQVGRMLTSKKQKLQSNLIASSSKKNTAS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025615`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025615

Location Chr05:114333529-114335379 (-)

Description Similar to At5g08350: GEM-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08350`	GEM-like protein 4.	No verified direct reference in this release
`At5g23370`	Putative GEM-like protein 8.	No verified direct reference in this release
`At5g23360`	GEM-like protein 7.	No verified direct reference in this release
`At5g23350`	GEM-like protein 6.	No verified direct reference in this release
`At5g13200`	GEM-like protein 5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025615 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009845 seed germination Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0098755 maintenance of seed dormancy by absisic acid Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT5G08350

ath:AT5G13200

ath:AT5G23350

ath:AT5G23360

ath:AT5G23370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.408

Rank 1 · LXL04_025615 · OH-1004

Nucleus0.372

Rank 2 · LXL04_025615 · OH-1004

Cell membrane0.191

Rank 3 · LXL04_025615 · OH-1004

Endoplasmic reticulum0.101

Rank 4 · LXL04_025615 · OH-1004

Mitochondrion0.068

Rank 5 · LXL04_025615 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02893.27GRAM72-142 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025615	`PF02893.27`	GRAM	72	142	3.6e-06	27.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FTA0`	Arabidopsis thaliana	GEM-like protein 4	51.351%	Swiss-Prot	weak database homology
`Q9FMW4`	Arabidopsis thaliana	Putative GEM-like protein 8	50.000%	Swiss-Prot	weak database homology
`Q9FMW5`	Arabidopsis thaliana	GEM-like protein 7	49.558%	Swiss-Prot	weak database homology
`Q9FMW6`	Arabidopsis thaliana	GEM-like protein 6	50.442%	Swiss-Prot	weak database homology
`Q9LYV6`	Arabidopsis thaliana	GEM-like protein 5	35.714%	Swiss-Prot	weak database homology

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