LXL04_025522 | RubberDandelionOmics

Gene overview

LXL04_025522

Reference: OH-1004 Chr: Chr05 Coordinates: 112915515-112918592 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1949 bp · LXL04_025522|LXL04_025522|OH1004|cDNA

ATGGTTATTCATCTAAAGAAACATTTACCTGAGAAATACATGGTTTTGCCATTTATTCGCAACCAGACCACCAAATGTAACGTGTCCTGCTCACGACAAAAGGGGAAAGCCTCTGAGAAAAAGTTGGAAAGGTCAAAATCCATTTTCAACCGCTGTAACAGAACACTTCTATCTTCACTGCCATGTGAGAGACACAGAGAGATCCACACACAGAATTCAACATGACGCTTTTCTCTTATCTAAACAGAGCTCGTAATGGC...

CDS

Download CDS FASTA

1728 bp · LXL04_025522|LXL04_025522|OH1004|CDS

ATGACGCTTTTCTCTTATCTAAACAGAGCTCGTAATGGCTTCTCCTCTTCCTCGAAGCTTCTCGTCGTTTTCTCTCTCAGTAGTGGGGGTCTTGTTGCTTACTCTGAATCACAATCAAGCATTCCCCCAAACAACAGAGAACTCGAAGGATTACCAAAAAAGAAAAAGGTGGTTGTACTTGGAACGGGGTGGGCAAGTATAAGTTTCCTCAAGGACTTAGACATTTCTTCATATGATGTTCAAGTGGTTTCTCCTAGAAA...

Protein

Download Protein FASTA

575 aa · LXL04_025522|LXL04_025522|OH1004|PROTEIN

MTLFSYLNRARNGFSSSSKLLVVFSLSSGGLVAYSESQSSIPPNNRELEGLPKKKKVVVLGTGWASISFLKDLDISSYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIIKKKKGDIHFWEAECTKIDAANKKVTCRSTIESNMGKKEFSLDYDYLVIATGAEVNTFNTPGVKEHCHFLKEVEDAQKIRTSVIDCFENAILPELTEEERRTNLHFVVVGGGPTGVEFAAELHDFVHEDLAKLYPLVQNMVRITI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025522`
TK1151 ID	TkA06G054630
OH-1004 ID	LXL04_025522
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.700
Protein coverage (%)	TK1151 88.444 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_025522

Location Chr05:112915515-112918592 (+)

Description Similar to NDB1: External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28220`	Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity).	Ca2+-binding and Ca2+-independent respiratory NADH and NADPH dehydrogenases of Arabidopsis thaliana.2007 · DOI: 10.1074/jbc.m704674200
`At4g21490`	Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane.	No verified direct reference in this release
`At4g05020`	Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity).	Ca2+-binding and Ca2+-independent respiratory NADH and NADPH dehydrogenases of Arabidopsis thaliana.2007 · DOI: 10.1074/jbc.m704674200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025522 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005758 mitochondrial intermembrane space Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0031314 extrinsic component of mitochondrial inner membrane Cellular Component

GO:0003954 NADH dehydrogenase activity Molecular Function

GO:0003959 NADPH dehydrogenase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0009916 alternative oxidase activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0120555 NADH dehydrogenase (ubiquinone) (non-electrogenic) activity Molecular Function

KEGG gene cross-reference

ath:AT4G05020

ath:AT4G21490

ath:AT4G28220

sot:102591773

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.938

Rank 1 · LXL04_025522 · OH-1004

Cytoplasm0.077

Rank 2 · LXL04_025522 · OH-1004

Nucleus0.060

Rank 3 · LXL04_025522 · OH-1004

Cell membrane0.046

Rank 4 · LXL04_025522 · OH-1004

Endoplasmic reticulum0.024

Rank 5 · LXL04_025522 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07992.21Pyr_redox_255-376 aa

PF00070.34Pyr_redox220-306 aa

PF22366.2NDH2_C510-571 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025522	`PF07992.21`	Pyr_redox_2	55	376	2e-55	189.0
LXL04_025522	`PF00070.34`	Pyr_redox	220	306	2.7e-12	47.7
LXL04_025522	`PF22366.2`	NDH2_C	510	571	2e-18	67.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1JPL4`	Arabidopsis thaliana	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	68.056%	Swiss-Prot	strong database homology
`F4JJJ3`	Arabidopsis thaliana	External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial	64.991%	Swiss-Prot	strong database homology
`Q94BV7`	Arabidopsis thaliana	External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial	63.574%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card