LXL04_025441 | RubberDandelionOmics

Gene overview

LXL04_025441

Reference: OH-1004 Chr: Chr05 Coordinates: 111827543-111831312 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2604 bp · LXL04_025441|LXL04_025441|OH1004|cDNA

ATGTGCTCTACAGAATGTAGACTCTTCCTCCTCTGTTTCTCTCTTTCCATAACTATCTCATCTGGAGCCAAGACCATATCTGAAAACCAGTCACTGTCTGGAGACCAAACCATCATATCAGAAAGAGAAGAATTCGAGTTGGGGTTCTTCAATGCTGGTGAGTCATCCAACTACTATATAGGAATCTGGTATAGGAAGCTATATTCTAATCCACCTACCATAGTTTGGGTGGCAAACAGAGAAACACCCATCTCCGATAG...

CDS

Download CDS FASTA

2604 bp · LXL04_025441|LXL04_025441|OH1004|CDS

ATGTGCTCTACAGAATGTAGACTCTTCCTCCTCTGTTTCTCTCTTTCCATAACTATCTCATCTGGAGCCAAGACCATATCTGAAAACCAGTCACTGTCTGGAGACCAAACCATCATATCAGAAAGAGAAGAATTCGAGTTGGGGTTCTTCAATGCTGGTGAGTCATCCAACTACTATATAGGAATCTGGTATAGGAAGCTATATTCTAATCCACCTACCATAGTTTGGGTGGCAAACAGAGAAACACCCATCTCCGATAG...

Protein

Download Protein FASTA

867 aa · LXL04_025441|LXL04_025441|OH1004|PROTEIN

MCSTECRLFLLCFSLSITISSGAKTISENQSLSGDQTIISEREEFELGFFNAGESSNYYIGIWYRKLYSNPPTIVWVANRETPISDRFRSELKIIDGNLVLLNESKSQIWSTNITTTFNSTIAVLRDSGNLVLTDNLNSVEPFWQSFDHPTHTWLPGAKFGYDNRLKKSQLLSSWRSNKDPGVGLFSLEFDPSTINFISKWDGSQGYWTTGPWKEQVYNFTPNMIRLNYIYNFSYGSNENGSYITYSPTMISRFVMDVSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025441`
TK1151 ID	TkA06G058770
OH-1004 ID	LXL04_025441
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.100
Protein coverage (%)	TK1151 95.961 / OH-1004 87.543 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025441

Location Chr05:111827543-111831312 (+)

Description Similar to At2g19130: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g19130`	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130.	No verified direct reference in this release
`At4g00340`	Serine/threonine-protein kinase.	No verified direct reference in this release
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At4g11900`	G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900.	No verified direct reference in this release
`At1g65790`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025441 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0045087 innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G65790

ath:AT2G19130

ath:AT4G00340

ath:AT4G11900

ath:AT4G21380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.843

Rank 1 · LXL04_025441 · OH-1004

Endoplasmic reticulum0.087

Rank 2 · LXL04_025441 · OH-1004

Cytoplasm0.063

Rank 3 · LXL04_025441 · OH-1004

Nucleus0.034

Rank 4 · LXL04_025441 · OH-1004

Lysosome / Vacuole0.033

Rank 5 · LXL04_025441 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453.31B_lectin73-176 aa

PF00954.26S_locus_glycop208-315 aa

PF08276.18PAN_2339-397 aa

PF07714.24PK_Tyr_Ser-Thr483-747 aa

PF00069.32Pkinase484-744 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025441	`PF01453.31`	B_lectin	73	176	4.2e-33	114.7
LXL04_025441	`PF00954.26`	S_locus_glycop	208	315	6.4e-28	98.2
LXL04_025441	`PF08276.18`	PAN_2	339	397	6.7e-10	39.7
LXL04_025441	`PF07714.24`	PK_Tyr_Ser-Thr	483	747	1.3e-42	146.6
LXL04_025441	`PF00069.32`	Pkinase	484	744	6.5e-47	160.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64477`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	53.806%	Swiss-Prot	strong database homology
`Q39203`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2	40.505%	Swiss-Prot	moderate database homology
`O81905`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase SD1-8	35.197%	Swiss-Prot	moderate database homology
`Q9T058`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900	36.170%	Swiss-Prot	moderate database homology
`Q39086`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase SD1-7	34.937%	Swiss-Prot	moderate database homology

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