LXL04_025436 | RubberDandelionOmics

Gene overview

LXL04_025436

Reference: OH-1004 Chr: Chr05 Coordinates: 111685336-111686273 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

732 bp · LXL04_025436|LXL04_025436|OH1004|cDNA

ATGAAGTCCTGCGAACTTTGCAAATCTTCGGCTAGGATCTATTGCGAATCTGACCAGGCTAGCTTGTGCTGGAGCTGCGACGCTAAGGTCCATTCCGCGAACTTCCTTGTAGCAAGGCATTCGCGGAACCTTCTTTGCCGTGTGTGCCAGTCTCCGACGCCGTGGACCGCATCCGGTGAGAAGCTTGGACCGTCGACTGCGTCGGTATGTGAGAAGTGTGTCGTTGACGGTACTTCTGATGACGATGATGACAGAGAAGA...

CDS

Download CDS FASTA

732 bp · LXL04_025436|LXL04_025436|OH1004|CDS

ATGAAGTCCTGCGAACTTTGCAAATCTTCGGCTAGGATCTATTGCGAATCTGACCAGGCTAGCTTGTGCTGGAGCTGCGACGCTAAGGTCCATTCCGCGAACTTCCTTGTAGCAAGGCATTCGCGGAACCTTCTTTGCCGTGTGTGCCAGTCTCCGACGCCGTGGACCGCATCCGGTGAGAAGCTTGGACCGTCGACTGCGTCGGTATGTGAGAAGTGTGTCGTTGACGGTACTTCTGATGACGATGATGACAGAGAAGA...

Protein

Download Protein FASTA

243 aa · LXL04_025436|LXL04_025436|OH1004|PROTEIN

MKSCELCKSSARIYCESDQASLCWSCDAKVHSANFLVARHSRNLLCRVCQSPTPWTASGEKLGPSTASVCEKCVVDGTSDDDDDREDIQGANYDDEDEYDGDEDGENELDMEDEDGDDNQVVPLSSTPPPAASSSSSEEFFNGNRGVLVKRKRENVADLSSEDDVDCSSIHKHNRTSEATYPIERNRTTLHQFFPSSSEAIVERLKNFRQRDKISGEYKSGPIVDVTKSTRAIGLDLNSSDSP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025436`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_025436

Location Chr05:111685336-111686273 (+)

Description Similar to MIP1A: B-box domain protein 30

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g21150`	Repressor of light-mediated regulation of seedling development.	BBX32, an Arabidopsis B-Box protein, functions in light signaling by suppressing HY5-regulated gene expression and interacting with STH2/BBX21.2011 · DOI: 10.1104/pp.111.177139
`At4g15248`	Developmental regulator acting by forming heterodimeric complexes, that sequester CO and CO-like (COL) proteins into non-functional complexes.	MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis.2016 · DOI: 10.1371/journal.pgen.1005959
`At5g24930`	Zinc finger protein CONSTANS-LIKE 4.	No verified direct reference in this release
`At3g21890`	Developmental regulator acting by forming heterodimeric complexes, that sequester CO and CO-like (COL) proteins into non-functional complexes.	MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis.2016 · DOI: 10.1371/journal.pgen.1005959
`At3g02380`	Putative transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025436 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009785 blue light signaling pathway Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0010224 response to UV-B Biological Process

GO:0032922 circadian regulation of gene expression Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

KEGG gene cross-reference

ath:AT3G02380

ath:AT3G21150

ath:AT3G21890

ath:AT4G15248

ath:AT5G24930

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.893

Rank 1 · LXL04_025436 · OH-1004

Cytoplasm0.184

Rank 2 · LXL04_025436 · OH-1004

Cell membrane0.034

Rank 3 · LXL04_025436 · OH-1004

Endoplasmic reticulum0.022

Rank 4 · LXL04_025436 · OH-1004

Mitochondrion0.016

Rank 5 · LXL04_025436 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00643.30zf-B_box2-42 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025436	`PF00643.30`	zf-B_box	2	42	1.9e-06	28.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LJB7`	Arabidopsis thaliana	B-box zinc finger protein 32	50.847%	Swiss-Prot	weak database homology
`Q1G3I2`	Arabidopsis thaliana	B-box domain protein 30	48.333%	Swiss-Prot	weak database homology
`Q940T9`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 4	44.595%	Swiss-Prot	weak database homology
`Q9LRM4`	Arabidopsis thaliana	B-box domain protein 31	40.000%	Swiss-Prot	weak database homology
`Q96502`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 2	39.189%	Swiss-Prot	weak database homology

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