LXL04_025420 | RubberDandelionOmics

Gene overview

LXL04_025420

Reference: OH-1004 Chr: Chr05 Coordinates: 111357114-111363485 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5511 bp · LXL04_025420|LXL04_025420|OH1004|cDNA

ATGAGAAGGGCCGTGTTGTTGAATGGAAGCATTTTCTGCCCCAGAAAGCTTGGATATGTAGTAGTTTTTGTAGCTCTTTTTTGTGTGTTTTTGGTAAATCTTTGGGAAGGAAGTCATTGGATCCATAAAGACACTTGGAAACCTCAATTTATAGAcgaaaatgaaCCAACACTCTACTACCAAAAAGAGTTTGACCAACATAGTATAGCTAGCAAGTATTGTAGCCTATCTTACTTAAAGACCAAAACATCAACATCCAA...

CDS

Download CDS FASTA

5511 bp · LXL04_025420|LXL04_025420|OH1004|CDS

ATGAGAAGGGCCGTGTTGTTGAATGGAAGCATTTTCTGCCCCAGAAAGCTTGGATATGTAGTAGTTTTTGTAGCTCTTTTTTGTGTGTTTTTGGTAAATCTTTGGGAAGGAAGTCATTGGATCCATAAAGACACTTGGAAACCTCAATTTATAGACGAAAATGAACCAACACTCTACTACCAAAAAGAGTTTGACCAACATAGTATAGCTAGCAAGTATTGTAGCCTATCTTACTTAAAGACCAAAACATCAACATCCAA...

Protein

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1836 aa · LXL04_025420|LXL04_025420|OH1004|PROTEIN

MRRAVLLNGSIFCPRKLGYVVVFVALFCVFLVNLWEGSHWIHKDTWKPQFIDENEPTLYYQKEFDQHSIASKYCSLSYLKTKTSTSKDCEKEEWQENLSKSCHCDDHDHLEKRECTDLTHEDTANSPCVVKRSPIRALLTSPKELPNSYHRPTRKLIDLGEVGGAAILIGVVLTTAVATLGVFVLVLFYCGGRNARNALKTAAKGQKDNKVDVNLGSKGSKDEAGPPQKVMSEVSVDPPKTDNSVDGHRNTPGVLPGALP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025420`
TK1151 ID	TkA06G060370
OH-1004 ID	LXL04_025420
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.700
Protein coverage (%)	TK1151 100.000 / OH-1004 99.837 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025420

Location Chr05:111357114-111363485 (+)

Description Similar to FH5: Formin-like protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54650`	Might be involved in the organization and polarity of the actin cytoskeleton.	No verified direct reference in this release
`UniProt: O23373`	Acts as actin nucleation factor that directs the formation of actin cables and polarized growth in pollen tubes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0545500`	Formin-like protein 11.	No verified direct reference in this release
`Os04g0100300`	Formin-like protein 18.	No verified direct reference in this release
`Os01g0897700`	Formin-like protein 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025420 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009860 pollen tube growth Biological Process

GO:0009960 endosperm development Biological Process

GO:0030036 actin cytoskeleton organization Biological Process

GO:0030041 actin filament polymerization Biological Process

GO:0045010 actin nucleation Biological Process

GO:0048317 seed morphogenesis Biological Process

GO:0051017 actin filament bundle assembly Biological Process

GO:0099636 cytoplasmic streaming Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009524 phragmoplast Cellular Component

KEGG gene cross-reference

ath:AT5G54650

dosa:Os01g0897700

dosa:Os04g0100300

dosa:Os07g0545500

osa:4325107

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.678

Rank 1 · LXL04_025420 · OH-1004

Cytoplasm0.152

Rank 2 · LXL04_025420 · OH-1004

Nucleus0.106

Rank 3 · LXL04_025420 · OH-1004

Endoplasmic reticulum0.078

Rank 4 · LXL04_025420 · OH-1004

Plastid0.045

Rank 5 · LXL04_025420 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02181.29FH2366-777 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025420	`PF02181.29`	FH2	366	777	2.5e-95	320.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94B77`	Arabidopsis thaliana	Formin-like protein 5	53.780%	Swiss-Prot	weak database homology
`O23373`	Arabidopsis thaliana	Formin-like protein 3	51.663%	Swiss-Prot	weak database homology
`Q0D5P3`	Oryza sativa subsp. japonica	Formin-like protein 11	48.434%	Swiss-Prot	weak database homology
`Q6MWG9`	Oryza sativa subsp. japonica	Formin-like protein 18	46.358%	Swiss-Prot	weak database homology
`Q8S0F0`	Oryza sativa subsp. japonica	Formin-like protein 1	48.252%	Swiss-Prot	weak database homology

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