LXL04_025255 | RubberDandelionOmics

Gene overview

LXL04_025255

Reference: OH-1004 Chr: Chr05 Coordinates: 108776489-108779366 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2499 bp · LXL04_025255|LXL04_025255|OH1004|cDNA

ATGGATGACGATGGGATCGAAGAGGTTAGTAGTAGCTTTAGTGCTAGGTTACTAAGGAGGAGGAGTGGTGGTGGCGATTCAGGTTCAAGGTGGGTGGATGGTAGTGAAGTCGATTCGGAATCACCGCCATGGTCGTTGATTAACGATGATGAAAATCGGAGTGAAGGGCATGGATCTATTCGAAGAAGGTTGGTGAAGAAAGCCAAGCGAGTTGACTCTTTTGATGTTGAAGCCATGGCTATCTCTGGCTCCCATGGCCA...

CDS

Download CDS FASTA

2499 bp · LXL04_025255|LXL04_025255|OH1004|CDS

ATGGATGACGATGGGATCGAAGAGGTTAGTAGTAGCTTTAGTGCTAGGTTACTAAGGAGGAGGAGTGGTGGTGGCGATTCAGGTTCAAGGTGGGTGGATGGTAGTGAAGTCGATTCGGAATCACCGCCATGGTCGTTGATTAACGATGATGAAAATCGGAGTGAAGGGCATGGATCTATTCGAAGAAGGTTGGTGAAGAAAGCCAAGCGAGTTGACTCTTTTGATGTTGAAGCCATGGCTATCTCTGGCTCCCATGGCCA...

Protein

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832 aa · LXL04_025255|LXL04_025255|OH1004|PROTEIN

MDDDGIEEVSSSFSARLLRRRSGGGDSGSRWVDGSEVDSESPPWSLINDDENRSEGHGSIRRRLVKKAKRVDSFDVEAMAISGSHGHHDKEVSIWQTLGLAFQTLGVVYGDMGTSPLYVFTDVFSKVKVESDVDVLGALSLVIYTIALVPLAKYVFIVLKANDNGEGGTFALYSLICRYAKINLLPNRQQADERISSFRLKLPTPELERALKIKEKLEHNSFYKTLLLLLVLMGTSMIIGDGILTPAISVMSAVSGLEGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025255`
TK1151 ID	TkA06G071440
OH-1004 ID	LXL04_025255
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025255

Location Chr05:108776489-108779366 (+)

Description Similar to POT12: Putative potassium transporter 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g60160`	Putative potassium transporter.	No verified direct reference in this release
`At5g09400`	Probable potassium transporter.	No verified direct reference in this release
`At4g33530`	Probable potassium transporter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0376900`	High-affinity potassium transporter.	No verified direct reference in this release
`Os07g0509200`	High-affinity potassium transporter.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025255 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006813 potassium ion transport Biological Process

GO:0048825 cotyledon development Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004016 adenylate cyclase activity Molecular Function

GO:0015079 potassium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G60160

ath:AT4G33530

ath:AT5G09400

dosa:Os07g0509200

dosa:Os09g0376900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.401

Rank 1 · LXL04_025255 · OH-1004

Lysosome / Vacuole0.332

Rank 2 · LXL04_025255 · OH-1004

Endoplasmic reticulum0.136

Rank 3 · LXL04_025255 · OH-1004

Cytoplasm0.115

Rank 4 · LXL04_025255 · OH-1004

Golgi apparatus0.106

Rank 5 · LXL04_025255 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02705.23K_trans100-571 aa

PF22776.1K_trans_C601-830 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025255	`PF02705.23`	K_trans	100	571	6.9e-160	533.2
LXL04_025255	`PF22776.1`	K_trans_C	601	830	3.1e-21	76.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80739`	Arabidopsis thaliana	Putative potassium transporter 12	73.357%	Swiss-Prot	strong database homology
`Q9FY75`	Arabidopsis thaliana	Potassium transporter 7	55.465%	Swiss-Prot	strong database homology
`Q8LPL8`	Arabidopsis thaliana	Potassium transporter 13	53.991%	Swiss-Prot	strong database homology
`Q6H4R6`	Oryza sativa subsp. japonica	Potassium transporter 23	67.650%	Swiss-Prot	strong database homology
`Q69RI8`	Oryza sativa subsp. japonica	Probable potassium transporter 14	55.875%	Swiss-Prot	strong database homology

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