LXL04_025199 | RubberDandelionOmics

Gene overview

LXL04_025199

Reference: OH-1004 Chr: Chr05 Coordinates: 107452767-107454904 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1587 bp · LXL04_025199|LXL04_025199|OH1004|cDNA

TAGACCATGTCATTTTCACAAAATTATGTTAGACTAATCGTCTCAATGTTGCTGCTCATACTAGTACATCATGCAGCTACAGATTGGGTGAATCATGGAGGAGGTATAGATAACCGGAGATTTGCCACCGACGAGCTTCTGATCAACCCTTCGACGGTGCACAAACTCAAGCTACGATGGAAGTTTTTCACCGGTAAAGACATATCAGCGACGCCAGCCATCGCCGGTGGAGTTGTGTACTTTCCGTCATGGAACGGGTT...

CDS

Download CDS FASTA

1581 bp · LXL04_025199|LXL04_025199|OH1004|CDS

ATGTCATTTTCACAAAATTATGTTAGACTAATCGTCTCAATGTTGCTGCTCATACTAGTACATCATGCAGCTACAGATTGGGTGAATCATGGAGGAGGTATAGATAACCGGAGATTTGCCACCGACGAGCTTCTGATCAACCCTTCGACGGTGCACAAACTCAAGCTACGATGGAAGTTTTTCACCGGTAAAGACATATCAGCGACGCCAGCCATCGCCGGTGGAGTTGTGTACTTTCCGTCATGGAACGGGTTCTTGTA...

Protein

Download Protein FASTA

526 aa · LXL04_025199|LXL04_025199|OH1004|PROTEIN

MSFSQNYVRLIVSMLLLILVHHAATDWVNHGGGIDNRRFATDELLINPSTVHKLKLRWKFFTGKDISATPAIAGGVVYFPSWNGFLYAVNAFTGALIWQQNLGQLTGLPGTGTYVNVSVSRATPVVTRNLLIVGIYGPAVVIAVNLASGKLVWSTTIDPRPLALITASGTVYSRGFYVGVSSLEETLPADKCCTFRGSLVKLDTRSGAIQWQTYTVPDNVGQLGGYSGGAIWGSSPAIDVSRGIVYVATGNLYTAPPEVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025199`
TK1151 ID	TkA06G075760
OH-1004 ID	LXL04_025199
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_025199`
Location	Chr05:107452767-107454904 (+)
Description	Similar to pvaA: Polyvinylalcohol dehydrogenase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_025199` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0022904 respiratory electron transport chain Biological Process GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0005509 calcium ion binding Molecular Function GO:0009055 electron transfer activity Molecular Function GO:0016491 oxidoreductase activity Molecular Function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Molecular Function GO:0020037 heme binding Molecular Function GO:0046872 metal ion binding Molecular Function GO:0047059 polyvinyl alcohol dehydrogenase (cytochrome) activity Molecular Function GO:0070968 pyrroloquinoline quinone binding Molecular Function
KEGG gene cross-reference	ag:BAC15559 ag:BAD95543 ag:CAA57464 gox:GOX1068 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.568

Rank 1 · LXL04_025199 · OH-1004

Lysosome / Vacuole0.138

Rank 2 · LXL04_025199 · OH-1004

Cytoplasm0.120

Rank 3 · LXL04_025199 · OH-1004

Endoplasmic reticulum0.074

Rank 4 · LXL04_025199 · OH-1004

Cell membrane0.065

Rank 5 · LXL04_025199 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01011.29PQQ27-101 aa

PF13570.14Beta-prop_ACSF452-103 aa

PF13360.14PQQ_257-302 aa

PF01011.29PQQ203-373 aa

PF13360.14PQQ_2363-486 aa

PF13570.14Beta-prop_ACSF4423-487 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025199	`PF01011.29`	PQQ	27	101	3.5e-23	82.8
LXL04_025199	`PF13570.14`	Beta-prop_ACSF4	52	103	3.3e-16	60.3
LXL04_025199	`PF13360.14`	PQQ_2	57	302	7e-23	82.2
LXL04_025199	`PF01011.29`	PQQ	203	373	3.5e-23	82.8
LXL04_025199	`PF13360.14`	PQQ_2	363	486	7e-23	82.2
LXL04_025199	`PF13570.14`	Beta-prop_ACSF4	423	487	3.3e-16	60.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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