LXL04_025190 | RubberDandelionOmics

Gene overview

LXL04_025190

Reference: OH-1004 Chr: Chr05 Coordinates: 107300816-107304526 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1809 bp · LXL04_025190|LXL04_025190|OH1004|cDNA

ATGGATTCGATGTCGATCCGTATGCCCTACAAAAACCTCAGCCATGATATGGACGCTGAGGTTGAAATGATGAAATTCGAAGAAGAAGCTAACCGACGCGTGAATTCCGATACTTCTGATGTATTTCCAAATAGGATTGCTTCAAATTCTTCTTCTCCGTCGCAAGGATTGCCGCCGACGAATTGTAGCTTCATCACGTTGATTTTGAGCTGCACTGTTGCCGCCGGTGTTCAATTTGGATGGGCATTGCAACTCTCGCT...

CDS

Download CDS FASTA

1809 bp · LXL04_025190|LXL04_025190|OH1004|CDS

ATGGATTCGATGTCGATCCGTATGCCCTACAAAAACCTCAGCCATGATATGGACGCTGAGGTTGAAATGATGAAATTCGAAGAAGAAGCTAACCGACGCGTGAATTCCGATACTTCTGATGTATTTCCAAATAGGATTGCTTCAAATTCTTCTTCTCCGTCGCAAGGATTGCCGCCGACGAATTGTAGCTTCATCACGTTGATTTTGAGCTGCACTGTTGCCGCCGGTGTTCAATTTGGATGGGCATTGCAACTCTCGCT...

Protein

Download Protein FASTA

602 aa · LXL04_025190|LXL04_025190|OH1004|PROTEIN

MDSMSIRMPYKNLSHDMDAEVEMMKFEEEANRRVNSDTSDVFPNRIASNSSSPSQGLPPTNCSFITLILSCTVAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILIGSLMISLAVIIIGFSADIGYLFGDTKEHCSTFKGTRTRAAFVFILGFWMLDLANNTVQGPARALLADLAGPDQRNSANAIFCSWMAIGNILGFSSGASGNWHRWFPFLTNRACCEACGNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025190`
TK1151 ID	TkA06G076200
OH-1004 ID	LXL04_025190
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_025190

Location Chr05:107300816-107304526 (+)

Description Similar to SUC3: Sucrose transport protein SUC3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02860`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	AtSUC3, a gene encoding a new Arabidopsis sucrose transporter, is expressed in cells adjacent to the vascular tissue and in a carpel cell layer.2000 · DOI: 10.1046/j.1365-313x.2000.00934.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0827200`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	No verified direct reference in this release
`UniProt: B8AF63`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	No verified direct reference in this release
`Os03g0170900`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	Transport activity of rice sucrose transporters OsSUT1 and OsSUT5.2010 · DOI: 10.1093/pcp/pcp172 Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected.2010 · DOI: 10.1093/jxb/erq175 cDNA cloning and tissue specific expression of a gene for sucrose transporter from rice (Oryza sativa L.).1997 · DOI: 10.1093/oxfordjournals.pcp.a029134
`UniProt: Q9LKH3`	Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025190 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009846 pollen germination Biological Process

GO:0015768 maltose transport Biological Process

GO:0015770 sucrose transport Biological Process

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0005364 maltose:proton symporter activity Molecular Function

GO:0008506 sucrose:proton symporter activity Molecular Function

GO:0008515 sucrose transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G02860

dosa:Os02g0827200

dosa:Os03g0170900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.426

Rank 1 · LXL04_025190 · OH-1004

Cell membrane0.284

Rank 2 · LXL04_025190 · OH-1004

Cytoplasm0.193

Rank 3 · LXL04_025190 · OH-1004

Golgi apparatus0.135

Rank 4 · LXL04_025190 · OH-1004

Endoplasmic reticulum0.124

Rank 5 · LXL04_025190 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_173-544 aa

PF13347.13MFS_280-220 aa

PF03209.22PUCC116-232 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025190	`PF07690.22`	MFS_1	73	544	5.7e-18	65.7
LXL04_025190	`PF13347.13`	MFS_2	80	220	4.2e-07	29.6
LXL04_025190	`PF03209.22`	PUCC	116	232	6e-06	26.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80605`	Arabidopsis thaliana	Sucrose transport protein SUC3	67.381%	Swiss-Prot	strong database homology
`Q6YK44`	Oryza sativa subsp. japonica	Sucrose transport protein SUT4	64.628%	Swiss-Prot	strong database homology
`B8AF63`	Oryza sativa subsp. indica	Sucrose transport protein SUT4	64.628%	Swiss-Prot	strong database homology
`Q10R54`	Oryza sativa subsp. japonica	Sucrose transport protein SUT1	56.818%	Swiss-Prot	strong database homology
`Q9LKH3`	Oryza sativa subsp. indica	Sucrose transport protein SUT1	56.818%	Swiss-Prot	strong database homology

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