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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_025121
Reference: OH-1004 Chr: Chr05 Coordinates: 106401533-106403044 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1512 bp · LXL04_025121|LXL04_025121|OH1004|cDNA

ATGATCAGGCGACTCCAATTCCATACCCCTCTCACAACCATCTCCGCCGTCCACCACCGCCTCTTTCACTCTAACGCCGCCAACCCCTCCGACCATAATCCACCGGCCACCACTCCCGATCCCATAACACTCGTCAATCCATCACATCTCCTCCGCGTCTGCACCATCCTCTACCAACAACAAGACTCACCGGAATCAAGACTCCACACCTCCCTCTCCCGCTGCGACTTCCAACTCACCCACGAATTCTTCCTCCAAAT...

CDS

Download CDS FASTA

1512 bp · LXL04_025121|LXL04_025121|OH1004|CDS

ATGATCAGGCGACTCCAATTCCATACCCCTCTCACAACCATCTCCGCCGTCCACCACCGCCTCTTTCACTCTAACGCCGCCAACCCCTCCGACCATAATCCACCGGCCACCACTCCCGATCCCATAACACTCGTCAATCCATCACATCTCCTCCGCGTCTGCACCATCCTCTACCAACAACAAGACTCACCGGAATCAAGACTCCACACCTCCCTCTCCCGCTGCGACTTCCAACTCACCCACGAATTCTTCCTCCAAAT...

Protein

Download Protein FASTA

503 aa · LXL04_025121|LXL04_025121|OH1004|PROTEIN

MIRRLQFHTPLTTISAVHHRLFHSNAANPSDHNPPATTPDPITLVNPSHLLRVCTILYQQQDSPESRLHTSLSRCDFQLTHEFFLQICNKFPYSWKPVYKFHKFSQTQTFNHTPVTLNKMLDVVGKARNIDLLWDLIHEMGRNKLATDKTYKIAVKTLASAREMKKCVEFFHVMNGFGYGYNLSTLNKVIETLCGCKLADEAKHIVFRLKECIKPDGFTYKCLIRGFCDVGELVEASRIWNLMVDEGFEVEIDGIENMMD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_025121
TK1151 IDTkA06G080220
OH-1004 IDLXL04_025121
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 48.310
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_025121
LocationChr05:106401533-106403044 (+)
DescriptionSimilar to At1g26500: Putative pentatricopeptide repeat-containing protein At1g26500
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g26500 Putative pentatricopeptide repeat-containing protein At1g26500. No verified direct reference in this release
At3g62470 Pentatricopeptide repeat-containing protein At3g62470, mitochondrial. No verified direct reference in this release
At3g62540 Pentatricopeptide repeat-containing protein At3g62540, mitochondrial. No verified direct reference in this release
At5g14820 Pentatricopeptide repeat-containing protein At5g14820, mitochondrial. No verified direct reference in this release
At3g22670 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025121 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G26500
ath:AT3G22670
ath:AT3G62470
ath:AT3G62540
ath:AT5G14820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.863
Rank 1 · LXL04_025121 · OH-1004
Nucleus0.062
Rank 2 · LXL04_025121 · OH-1004
Plastid0.059
Rank 3 · LXL04_025121 · OH-1004
Cytoplasm0.027
Rank 4 · LXL04_025121 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_025121 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12854.14PPR_1212-244 aa
PF13041.13PPR_2215-249 aa
PF01535.27PPR218-248 aa
PF23276.3TPR_24266-374 aa
PF13041.13PPR_2284-328 aa
PF01535.27PPR284-313 aa
PF12854.14PPR_1285-310 aa
PF13041.13PPR_2347-393 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_025121PF12854.14PPR_12122446.3e-2587.3
LXL04_025121PF13041.13PPR_22152491.3e-38131.5
LXL04_025121PF01535.27PPR2182483e-2896.7
LXL04_025121PF23276.3TPR_242663741.2e-1042.2
LXL04_025121PF13041.13PPR_22843281.3e-38131.5
LXL04_025121PF01535.27PPR2843133e-2896.7
LXL04_025121PF12854.14PPR_12853106.3e-2587.3
LXL04_025121PF13041.13PPR_23473931.3e-38131.5
LXL04_025121PF13812.13PPR_33473916e-1659.0
LXL04_025121PF01535.27PPR3513803e-2896.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FZD4Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g2650063.020%Swiss-Protstrong database homology
Q9LZP3Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g62470, mitochondrial28.662%Swiss-Protweak database homology
Q3EAF8Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g62540, mitochondrial28.450%Swiss-Protweak database homology
Q9LEQ7Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g14820, mitochondrial28.450%Swiss-Protweak database homology
Q9LUJ4Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g22670, mitochondrial26.056%Swiss-Protweak database homology

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