LXL04_025098 | RubberDandelionOmics

Gene overview

LXL04_025098

Reference: OH-1004 Chr: Chr05 Coordinates: 105937550-105943178 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2154 bp · LXL04_025098|LXL04_025098|OH1004|cDNA

ATGGCGGATGCTCTATCTGCCATTCCGGCCGCCGTGCTTCGAAACCTCTCTGATAAGCTATATGAGAAGCGGAAAAATGCGGCGCTTGAGGTTGAAGGAATTGTAAAGCAATTGACAGCTGCTGGAGATCATGATAAGATTACTGCTGTGATTAATCTGTTGACTCATGAGTATACTTACTCACCTCAAGCAAATCACCGCAAGGGAGGTTTGATAGGCTTGGCTGCAGCAACTGTTGGTTTGAGTGCTGAAGCTGCACA...

CDS

Download CDS FASTA

2154 bp · LXL04_025098|LXL04_025098|OH1004|CDS

ATGGCGGATGCTCTATCTGCCATTCCGGCCGCCGTGCTTCGAAACCTCTCTGATAAGCTATATGAGAAGCGGAAAAATGCGGCGCTTGAGGTTGAAGGAATTGTAAAGCAATTGACAGCTGCTGGAGATCATGATAAGATTACTGCTGTGATTAATCTGTTGACTCATGAGTATACTTACTCACCTCAAGCAAATCACCGCAAGGGAGGTTTGATAGGCTTGGCTGCAGCAACTGTTGGTTTGAGTGCTGAAGCTGCACA...

Protein

Download Protein FASTA

717 aa · LXL04_025098|LXL04_025098|OH1004|PROTEIN

MADALSAIPAAVLRNLSDKLYEKRKNAALEVEGIVKQLTAAGDHDKITAVINLLTHEYTYSPQANHRKGGLIGLAAATVGLSAEAAQHLEQILPPVINSFSDQDSRVRYYACEALYNIAKVVRGEFIFHFNKIFDALCKLSADSDPNVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025098`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025098

Location Chr05:105937550-105943178 (-)

Description Similar to VAC14: Protein VAC14 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g01690`	The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025098 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006661 phosphatidylinositol biosynthetic process Biological Process

GO:0007033 vacuole organization Biological Process

GO:0007165 signal transduction Biological Process

GO:0009555 pollen development Biological Process

GO:1903100 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0010008 endosome membrane Cellular Component

GO:0031901 early endosome membrane Cellular Component

GO:0031902 late endosome membrane Cellular Component

KEGG gene cross-reference

ath:AT2G01690

dre:447912

gga:415678

hsa:55697

xla:447315

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.584

Rank 1 · LXL04_025098 · OH-1004

Golgi apparatus0.252

Rank 2 · LXL04_025098 · OH-1004

Nucleus0.221

Rank 3 · LXL04_025098 · OH-1004

Lysosome / Vacuole0.163

Rank 4 · LXL04_025098 · OH-1004

Cell membrane0.129

Rank 5 · LXL04_025098 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23271.2HEAT_GCN15-123 aa

PF24714.2TOR1L1_N12-240 aa

PF24987.2HEAT_EF3_N24-123 aa

PF12755.14Vac14_Fab1_bd65-161 aa

PF13513.13HEAT_EZ67-118 aa

PF02985.29HEAT92-121 aa

PF23271.2HEAT_GCN1113-255 aa

PF12717.14Cnd1171-280 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025098	`PF23271.2`	HEAT_GCN1	5	123	3.5e-19	70.4
LXL04_025098	`PF24714.2`	TOR1L1_N	12	240	7.6e-12	45.9
LXL04_025098	`PF24987.2`	HEAT_EF3_N	24	123	1.8e-18	67.8
LXL04_025098	`PF12755.14`	Vac14_Fab1_bd	65	161	2.6e-51	172.9
LXL04_025098	`PF13513.13`	HEAT_EZ	67	118	5.9e-15	56.1
LXL04_025098	`PF02985.29`	HEAT	92	121	2.4e-18	65.2
LXL04_025098	`PF23271.2`	HEAT_GCN1	113	255	3.5e-19	70.4
LXL04_025098	`PF12717.14`	Cnd1	171	280	7.5e-12	46.3
LXL04_025098	`PF24987.2`	HEAT_EF3_N	232	395	1.8e-18	67.8
LXL04_025098	`PF11916.14`	Vac14_Fig4_bd	429	608	2.2e-71	239.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZU97`	Arabidopsis thaliana	Protein VAC14 homolog	75.936%	Swiss-Prot	strong database homology

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