LXL04_025025 | RubberDandelionOmics

Gene overview

LXL04_025025

Reference: OH-1004 Chr: Chr05 Coordinates: 104222831-104225047 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1272 bp · LXL04_025025|LXL04_025025|OH1004|cDNA

ATGGAGACTAATGGTCATAAGAGAGGAAGGAGAAAAGACTATAATACCCATGAAGAAAGCACATCACTTTCTGATGATGAACTTGATCCATGGACCGCGTGGGCTTACAAACCTCGAACAATTACACTTTTATTTATAGGCTCATGTTTTCTAATTTGGGCTAGTGGAGCTCTCGATCCAGAAAGCAATCCATCAGATGATATTGTTACATCTGTCAAAAgGGGCATATGGGCAATGATTGCAGTTTTTCTGGCTTACTG...

CDS

Download CDS FASTA

1272 bp · LXL04_025025|LXL04_025025|OH1004|CDS

ATGGAGACTAATGGTCATAAGAGAGGAAGGAGAAAAGACTATAATACCCATGAAGAAAGCACATCACTTTCTGATGATGAACTTGATCCATGGACCGCGTGGGCTTACAAACCTCGAACAATTACACTTTTATTTATAGGCTCATGTTTTCTAATTTGGGCTAGTGGAGCTCTCGATCCAGAAAGCAATCCATCAGATGATATTGTTACATCTGTCAAAAGGGGCATATGGGCAATGATTGCAGTTTTTCTGGCTTACTG...

Protein

Download Protein FASTA

423 aa · LXL04_025025|LXL04_025025|OH1004|PROTEIN

METNGHKRGRRKDYNTHEESTSLSDDELDPWTAWAYKPRTITLLFIGSCFLIWASGALDPESNPSDDIVTSVKRGIWAMIAVFLAYCLLQAPSTLLIRPHPAFWRLIHGMAVIYLVALTFLLFQNRDDARQFMKYLHPDLGVELPERSYGGDCRIYVPDNPTNRFINVYETLFDEFVPAHLLGWWAKAIMIRNQPLLWVLSIGFELMELTFRHMLPNFNECWWDSIVLDILICNWLGIWAGMHTVRYFDGKTYEWVGISR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025025`
TK1151 ID	TkA06G087060
OH-1004 ID	LXL04_025025
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 68.794 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025025

Location Chr05:104222831-104225047 (+)

Description Similar to PSS1: CDP-diacylglycerol--serine O-phosphatidyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g15110`	Catalyzes a base-exchange reaction in which the polar head group of phosphatidylethanolamine (PE) or phosphatidylcholine (PC) is replaced by L-serine.	PHOSPHATIDYLSERINE SYNTHASE1 is required for microspore development in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1365-313x.2011.04624.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0118300`	Catalyzes a base-exchange reaction in which the polar head group of phosphatidylethanolamine (PE) or phosphatidylcholine (PC) is replaced by L-serine.	No verified direct reference in this release
`Os05g0554400`	Catalyzes a base-exchange reaction in which the polar head group of phosphatidylethanolamine (PE) or phosphatidylcholine (PC) is replaced by L-serine.	No verified direct reference in this release
`UniProt: Q5N8Q3`	Catalyzes a base-exchange reaction in which the polar head group of phosphatidylethanolamine (PE) or phosphatidylcholine (PC) is replaced by L-serine.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025025 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006646 phosphatidylethanolamine biosynthetic process Biological Process

GO:0006659 phosphatidylserine biosynthetic process Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0031965 nuclear membrane Cellular Component

GO:0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity Molecular Function

GO:0106245 L-serine-phosphatidylethanolamine phosphatidyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G15110

dosa:Os01g0118300

dosa:Os01g0683500

dosa:Os05g0554400

dre:100004136

osa:4339554

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.764

Rank 1 · LXL04_025025 · OH-1004

Golgi apparatus0.117

Rank 2 · LXL04_025025 · OH-1004

Nucleus0.109

Rank 3 · LXL04_025025 · OH-1004

Cytoplasm0.083

Rank 4 · LXL04_025025 · OH-1004

Cell membrane0.077

Rank 5 · LXL04_025025 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03034.21PSS99-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025025	`PF03034.21`	PSS	99	380	2.4e-113	379.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HXY7`	Arabidopsis thaliana	CDP-diacylglycerol--serine O-phosphatidyltransferase 1	79.009%	Swiss-Prot	strong database homology
`Q0JR55`	Oryza sativa subsp. japonica	CDP-diacylglycerol--serine O-phosphatidyltransferase 1	77.700%	Swiss-Prot	strong database homology
`Q6I628`	Oryza sativa subsp. japonica	CDP-diacylglycerol--serine O-phosphatidyltransferase 2	74.468%	Swiss-Prot	strong database homology
`Q5N8Q3`	Oryza sativa subsp. japonica	CDP-diacylglycerol--serine O-phosphatidyltransferase 3	78.659%	Swiss-Prot	strong database homology

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