LXL04_024998 | RubberDandelionOmics

Gene overview

LXL04_024998

Reference: OH-1004 Chr: Chr05 Coordinates: 103775111-103780372 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3840 bp · LXL04_024998|LXL04_024998|OH1004|cDNA

ATGATTATCGTCTTCTTTTTGGCCTCTGTTCTTCTCTCTTGTCTACCGTTCCTTCATTCTACTACAGACCTCAACACTACTATGTCTACCTGCCCAAACGGTTTTACTTGCCCAAAAATTTCTCCATTCGAGTACCCGTTTTATAATACCAGTGACAGCCGGTGTGGTTTGATCAAGGTCAACTGTAGTTCGAGTAGTAGCAAAATTAAATTTGGAGAAGAGTCATTTGAGATTGTTTCCAAGTTCATGCCTGGTCCTTC...

CDS

Download CDS FASTA

3840 bp · LXL04_024998|LXL04_024998|OH1004|CDS

ATGATTATCGTCTTCTTTTTGGCCTCTGTTCTTCTCTCTTGTCTACCGTTCCTTCATTCTACTACAGACCTCAACACTACTATGTCTACCTGCCCAAACGGTTTTACTTGCCCAAAAATTTCTCCATTCGAGTACCCGTTTTATAATACCAGTGACAGCCGGTGTGGTTTGATCAAGGTCAACTGTAGTTCGAGTAGTAGCAAAATTAAATTTGGAGAAGAGTCATTTGAGATTGTTTCCAAGTTCATGCCTGGTCCTTC...

Protein

Download Protein FASTA

1279 aa · LXL04_024998|LXL04_024998|OH1004|PROTEIN

MIIVFFLASVLLSCLPFLHSTTDLNTTMSTCPNGFTCPKISPFEYPFYNTSDSRCGLIKVNCSSSSSKIKFGEESFEIVSKFMPGPSVLIRNRTFETQVNDQSCDALMDNFTSPIPLLYSITIVPFITLYKCKTNGNDDAKMEAYFKQSDYNRYTRCRDHNFYYQYIVGESTIPSDLPSTCEVIRLPVIAQWSNGATQRLDETNIFSLLNSNFSVTFHVSSSCKDCRKREGECHAQDGSFQCLNARKYEKQKHGKTLLLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024998`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024998

Location Chr05:103775111-103780372 (+)

Description Similar to LRK10L-1.1: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g25390`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1.	No verified direct reference in this release
`At1g18390`	Probable receptor-like serine/threonine-protein kinase involved in abscisic acid (ABA) signaling.	The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance.2015 · DOI: 10.1007/s00299-014-1724-2
`At5g38210`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3.	No verified direct reference in this release
`At1g66880`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4.	No verified direct reference in this release
`At2g23450`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024998 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0042631 cellular response to water deprivation Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030247 polysaccharide binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G18390

ath:AT1G25390

ath:AT5G38210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.710

Rank 1 · LXL04_024998 · OH-1004

Cytoplasm0.124

Rank 2 · LXL04_024998 · OH-1004

Endoplasmic reticulum0.093

Rank 3 · LXL04_024998 · OH-1004

Lysosome / Vacuole0.077

Rank 4 · LXL04_024998 · OH-1004

Extracellular0.060

Rank 5 · LXL04_024998 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14380.12WAK_assoc168-244 aa

PF07714.24PK_Tyr_Ser-Thr327-595 aa

PF00069.32Pkinase327-594 aa

PF00069.32Pkinase953-1221 aa

PF07714.24PK_Tyr_Ser-Thr954-1222 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024998	`PF14380.12`	WAK_assoc	168	244	7.9e-11	43.2
LXL04_024998	`PF07714.24`	PK_Tyr_Ser-Thr	327	595	2.5e-95	319.4
LXL04_024998	`PF00069.32`	Pkinase	327	594	1e-93	314.2
LXL04_024998	`PF00069.32`	Pkinase	953	1221	1e-93	314.2
LXL04_024998	`PF07714.24`	PK_Tyr_Ser-Thr	954	1222	2.5e-95	319.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6K9`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1	44.164%	Swiss-Prot	weak database homology
`P0C5E2`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2	41.483%	Swiss-Prot	weak database homology
`Q8VYG0`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3	60.355%	Swiss-Prot	weak database homology
`F4HQ17`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4	59.475%	Swiss-Prot	weak database homology
`Q8RY67`	Arabidopsis thaliana	Wall-associated receptor kinase-like 14	47.934%	Swiss-Prot	weak database homology

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