LXL04_024986 | RubberDandelionOmics

Gene overview

LXL04_024986

Reference: OH-1004 Chr: Chr05 Coordinates: 103543363-103545735 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1248 bp · LXL04_024986|LXL04_024986|OH1004|cDNA

ATGGTAGGTTCGAAGAAGGAGGAGGAAACCTCTTCTTCCGTAGCTCCTGCTGCAGCTGTTACACGTAGAGACCCGTATGAAGTTTTGAATGTGGCAAGAGATGCTTCCGATCAGGAGATTAAATCTGCTTACAGAAAGCTCGCACTCAAAGTTATTGATAGGTATCATCCCGACAAGAATGCTAGTAACCCTGAAGCTTCAGAACTATTTAAGGAGGTTGCATATTCTTACAACATTTTATCCGATCCAGAGAAAAGAAG...

CDS

Download CDS FASTA

1248 bp · LXL04_024986|LXL04_024986|OH1004|CDS

ATGGTAGGTTCGAAGAAGGAGGAGGAAACCTCTTCTTCCGTAGCTCCTGCTGCAGCTGTTACACGTAGAGACCCGTATGAAGTTTTGAATGTGGCAAGAGATGCTTCCGATCAGGAGATTAAATCTGCTTACAGAAAGCTCGCACTCAAAGTTATTGATAGGTATCATCCCGACAAGAATGCTAGTAACCCTGAAGCTTCAGAACTATTTAAGGAGGTTGCATATTCTTACAACATTTTATCCGATCCAGAGAAAAGAAG...

Protein

Download Protein FASTA

415 aa · LXL04_024986|LXL04_024986|OH1004|PROTEIN

MVGSKKEEETSSSVAPAAAVTRRDPYEVLNVARDASDQEIKSAYRKLALKVIDRYHPDKNASNPEASELFKEVAYSYNILSDPEKRRQYDNAGFEAIDADGTDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEDALTGTVTVKPLPLGSSLSGKVEKQSAHFFGVNVTEEQAQAGIIVRVTSATQSKFKLLYFEQDNGGGYNLALQEESEKTGKVTSAGMYFLHFQVYRMDSSVNALAMAKDPEAAFFKRLEGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024986`
TK1151 ID	TkA06G090440
OH-1004 ID	LXL04_024986
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024986

Location Chr05:103543363-103545735 (-)

Description Similar to ATJ15: Chaperone protein dnaJ 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68370`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release
`At1g24120`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release
`At1g59980`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024986 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006260 DNA replication Biological Process

GO:0009408 response to heat Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0042026 protein refolding Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0016020 membrane Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0008092 cytoskeletal protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G24120

ath:AT1G59980

ath:AT1G68370

mfa:Mfla_0750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.500

Rank 1 · LXL04_024986 · OH-1004

Nucleus0.228

Rank 2 · LXL04_024986 · OH-1004

Endoplasmic reticulum0.203

Rank 3 · LXL04_024986 · OH-1004

Golgi apparatus0.190

Rank 4 · LXL04_024986 · OH-1004

Cell membrane0.124

Rank 5 · LXL04_024986 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00226.37DnaJ24-90 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024986	`PF00226.37`	DnaJ	24	90	7.9e-24	84.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSY2`	Arabidopsis thaliana	Chaperone protein dnaJ 15	74.328%	Swiss-Prot	strong database homology
`Q8VXV4`	Arabidopsis thaliana	Chaperone protein dnaJ 16	61.988%	Swiss-Prot	strong database homology
`Q6XL73`	Arabidopsis thaliana	Chaperone protein dnaJ 39	51.117%	Swiss-Prot	strong database homology

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