LXL04_024974 | RubberDandelionOmics

Gene overview

LXL04_024974

Reference: OH-1004 Chr: Chr05 Coordinates: 103188888-103191227 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

807 bp · LXL04_024974|LXL04_024974|OH1004|cDNA

ATGGCTTCTATCTTCTCCTTCACTTCTCCCTCCTCATTACTCACCAACCATTCTTCTAGTTTCAAGGGGAATGTCAGAAATCTCAAGTCAAGCATTTGTCAATTTCCTTCCATACCTAATTACAAGAACAACAGAGTGCAACAGCAGCGGAAGTCCTTAATTGTAGCTTCTTCGTCGCCGATTCCTACAGCTGTTGTGAGTTCAAATGTCCGATACCGGCTGGACAATTTGGGTCCCCAACCTGGTTCGAGAAAGAAAGC...

CDS

Download CDS FASTA

807 bp · LXL04_024974|LXL04_024974|OH1004|CDS

ATGGCTTCTATCTTCTCCTTCACTTCTCCCTCCTCATTACTCACCAACCATTCTTCTAGTTTCAAGGGGAATGTCAGAAATCTCAAGTCAAGCATTTGTCAATTTCCTTCCATACCTAATTACAAGAACAACAGAGTGCAACAGCAGCGGAAGTCCTTAATTGTAGCTTCTTCGTCGCCGATTCCTACAGCTGTTGTGAGTTCAAATGTCCGATACCGGCTGGACAATTTGGGTCCCCAACCTGGTTCGAGAAAGAAAGC...

Protein

Download Protein FASTA

268 aa · LXL04_024974|LXL04_024974|OH1004|PROTEIN

MASIFSFTSPSSLLTNHSSSFKGNVRNLKSSICQFPSIPNYKNNRVQQQRKSLIVASSSPIPTAVVSSNVRYRLDNLGPQPGSRKKAKRKGRGHAAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRLPKLRGIAGGMKAGVSKYVPVNLKDIETAGFEEGEEVSLESLKEKGLINPSGRERRLPLKILGDGELSVKLNFKARAFSAQAKEKLEAVGCSLTVLPGRKKWVKPSVAKNMARADEYFAKKRAAAAGGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024974`
TK1151 ID	TkA06G092110
OH-1004 ID	LXL04_024974
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024974

Location Chr05:103188888-103191227 (-)

Description Similar to RPL15: 50S ribosomal protein L15, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g25920`	Large ribosomal subunit protein uL15c.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024974 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0000311 plastid large ribosomal subunit Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

GO:0019843 rRNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G25920

cyc:PCC7424_3720

cyp:PCC8801_0235

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.926

Rank 1 · LXL04_024974 · OH-1004

Mitochondrion0.076

Rank 2 · LXL04_024974 · OH-1004

Nucleus0.025

Rank 3 · LXL04_024974 · OH-1004

Cytoplasm0.013

Rank 4 · LXL04_024974 · OH-1004

Cell membrane0.006

Rank 5 · LXL04_024974 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29471.1Ribosomal_uL15_N94-130 aa

PF00828.26Ribosomal_L27A151-224 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024974	`PF29471.1`	Ribosomal_uL15_N	94	130	6.2e-14	52.4
LXL04_024974	`PF00828.26`	Ribosomal_L27A	151	224	1.6e-15	58.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P25873`	Arabidopsis thaliana	Large ribosomal subunit protein uL15c	67.181%	Swiss-Prot	strong database homology

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