Gene Card
Gene overview
cDNA / CDS / Protein Sequences
800 bp · LXL04_024909|LXL04_024909|OH1004|cDNA
ATGGATATGTTACAAAGTAAAGCTGATGATATTGAGAACATAACAGAAACTTCATTAGACAGACAAAAACAACTTGTTGATAGTCAAAATGCTGCACTTGAAGTTCTTCAAACCTTAACAAGTTTTCAGTCACAAGCACTCGAAGAAAGCAGAGGGACTCTACAGCAATTGATAGAGCTTGGGCATATTTTCGAGTCAAAGCAAGCAAGCATGTTTCTTGCAATCGAATCACAAGTCATTAAAGCTTTTCTTGTTTATTC...
759 bp · LXL04_024909|LXL04_024909|OH1004|CDS
ATGGATATGTTACAAAGTAAAGCTGATGATATTGAGAACATAACAGAAACTTCATTAGACAGACAAAAACAACTTGTTGATAGTCAAAATGCTGCACTTGAAGTTCTTCAAACCTTAACAAGTTTTCAGTCACAAGCACTCGAAGAAAGCAGAGGGACTCTACAGCAATTGATAGAGCTTGGGCATATTTTCGAGTCAAAGCAAGCAAGCATGTTTCTTGCAATCGAATCACAAGTCATTAAAGCTTTTCTTGTTTATTC...
Protein
Download Protein FASTA252 aa · LXL04_024909|LXL04_024909|OH1004|PROTEIN
MDMLQSKADDIENITETSLDRQKQLVDSQNAALEVLQTLTSFQSQALEESRGTLQQLIELGHIFESKQASMFLAIESQVIKAFLVYSILIFTLYMFTSTKQTYNIRPKLYIGLYATFFVEFVVLRYGNDVEKQAWIISIVIYGCFRAVTRFKLNKTNKESFLQQFGLSPSATNKRAIGSVGIMSCVGCTSLYYLDNSIFQINWKDDEPYSNDQLERCVNSWVNSFGNKHLSRQKGKMVIYSIQKVTFTPFLW
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024909 |
|---|---|
| TK1151 ID | TkA06G096350 |
| OH-1004 ID | LXL04_024909 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 90.100 |
| Protein coverage (%) | TK1151 82.065 / OH-1004 55.159Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024909 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr05:101997980-101999620 (-) | ||||||
| Description | Similar to GEX1: Protein GAMETE EXPRESSED 1 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0009553 embryo sac development Biological Process GO:0009555 pollen development Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0042802 identical protein binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT5G55490 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q681K7 | Arabidopsis thaliana | Protein GAMETE EXPRESSED 1 | 44.751% | Swiss-Prot | moderate database homology |