Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1218 bp · LXL04_024807|LXL04_024807|OH1004|cDNA
ATGAAAAGTAAAACTTGGAGATGGGTTTTAGGGCTAATTTACATACTTGCAGTTGCAACAATTTGGATAGCCGCTAGTTTTGTAGTTCAATCAGTAGTTGATGGAGGTGTTTCACCTTTTCTCGTCACATATATATGCAATTCATTGTTTGTAATATACATTCCGTTGGTAGAAATCGGGCGTTATCTGGAAGATAACTATTCAAATTTACTATTTTGGAGAAGTAAAGATGATAGTATTAGTATTAGTAACCCACCAAG...
1218 bp · LXL04_024807|LXL04_024807|OH1004|CDS
ATGAAAAGTAAAACTTGGAGATGGGTTTTAGGGCTAATTTACATACTTGCAGTTGCAACAATTTGGATAGCCGCTAGTTTTGTAGTTCAATCAGTAGTTGATGGAGGTGTTTCACCTTTTCTCGTCACATATATATGCAATTCATTGTTTGTAATATACATTCCGTTGGTAGAAATCGGGCGTTATCTGGAAGATAACTATTCAAATTTACTATTTTGGAGAAGTAAAGATGATAGTATTAGTATTAGTAACCCACCAAG...
Protein
Download Protein FASTA405 aa · LXL04_024807|LXL04_024807|OH1004|PROTEIN
MKSKTWRWVLGLIYILAVATIWIAASFVVQSVVDGGVSPFLVTYICNSLFVIYIPLVEIGRYLEDNYSNLLFWRSKDDSISISNPPRTQDSEVVNLLVEKHIGTVTEEAVNNDDDDVSLETTVVSSQHATCEQLDSKGRWTRKRLAKVSLLICPFWFLAQLSFNLSLKYTSVTSNTILSSSSSLFTFLVSLAFLGEKFTWIKLASVLLCMGGTIIVSLGDSETGTSAIASNPTLGDILALISSAFYAVYITLIRKNLPDE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024807 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024807 |
|---|---|
| Location | Chr05:99273356-99274721 (+) |
| Description | Similar to SLC35F5: Solute carrier family 35 member F5 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0015871 choline transport Biological Process GO:0016020 membrane Cellular Component GO:0015220 choline transmembrane transporter activity Molecular Function |
| KEGG gene cross-reference | bta:615480 hsa:80255 mmu:74150 pon:100173522 sce:YML018C These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF16913.12PUNUT131-256 aaPF00892.27EamA149-217 aaPF03151.23TPT155-300 aaPF08449.18UAA156-341 aaPF06027.19SLC35F167-293 aaPF00892.27EamA234-380 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024807 | PF16913.12 | PUNUT | 131 | 256 | 7.3e-08 | 32.7 |
| LXL04_024807 | PF00892.27 | EamA | 149 | 217 | 6.9e-19 | 69.2 |
| LXL04_024807 | PF03151.23 | TPT | 155 | 300 | 5.4e-06 | 26.7 |
| LXL04_024807 | PF08449.18 | UAA | 156 | 341 | 6.5e-07 | 29.5 |
| LXL04_024807 | PF06027.19 | SLC35F | 167 | 293 | 4.9e-11 | 43.4 |
| LXL04_024807 | PF00892.27 | EamA | 234 | 380 | 6.9e-19 | 69.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.