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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_024660
Reference: OH-1004 Chr: Chr05 Coordinates: 96199394-96203570 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1653 bp · LXL04_024660|LXL04_024660|OH1004|cDNA

ATGGGTATCTGTTTTTCGACAACCAAGATCAGCGGCTCCGACAGCATCGCTCCCTCCCTTAACGACGGCGCCTCCACCACCGCCGGCGAAAACCAACAAAAGCATCTCGTCTTGAAACAGGATGGACGTGGGTATAATGGTAAATTACCCAAAACGAGAGATTCCAATAGGAGTGCATATCAAAAGCAGGGTTTCAACAATAGTAAAACTAAACCGAAAGGTAAGTCGACGCCAAAGCGTCAAAAAGGGTTGATTCCTTG...

CDS

Download CDS FASTA

1653 bp · LXL04_024660|LXL04_024660|OH1004|CDS

ATGGGTATCTGTTTTTCGACAACCAAGATCAGCGGCTCCGACAGCATCGCTCCCTCCCTTAACGACGGCGCCTCCACCACCGCCGGCGAAAACCAACAAAAGCATCTCGTCTTGAAACAGGATGGACGTGGGTATAATGGTAAATTACCCAAAACGAGAGATTCCAATAGGAGTGCATATCAAAAGCAGGGTTTCAACAATAGTAAAACTAAACCGAAAGGTAAGTCGACGCCAAAGCGTCAAAAAGGGTTGATTCCTTG...

Protein

Download Protein FASTA

550 aa · LXL04_024660|LXL04_024660|OH1004|PROTEIN

MGICFSTTKISGSDSIAPSLNDGASTTAGENQQKHLVLKQDGRGYNGKLPKTRDSNRSAYQKQGFNNSKTKPKGKSTPKRQKGLIPCGKRTDFGYLKDFDRRYSTGKLLGHGQFGYTYVAVDKANGDRVAVKKIDKAKMVLPIAVEDVKREVKILRALSGHENVVQFHNAFEDDSFVYIVMELCKGGELLDRILSKKEGRYTEKDAAIVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPNEDSHLKATDFGLSDFIRPG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_024660
TK1151 IDTkA06G119610
OH-1004 IDLXL04_024660
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_024660
LocationChr05:96199394-96203570 (+)
DescriptionSimilar to CPK28: Calcium-dependent protein kinase 28
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g66210 May play a role in signal transduction pathways that involve calcium as a second messenger (Probable).
Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development.2013 · DOI: 10.1111/tpj.12090
The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.2014 · DOI: 10.1016/j.chom.2014.10.007
Catalytically inactive subgroup VIII receptor-like cytoplasmic kinases regulate the immune-triggered oxidative burst in Arabidopsis thaliana.2025 · DOI: 10.1093/jxb/erae486
At2g17890 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
At4g36070 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0409900 May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity).
A rice calcium-dependent protein kinase is expressed in cortical root cells during the presymbiotic phase of the arbuscular mycorrhizal symbiosis.2011 · DOI: 10.1186/1471-2229-11-90
Rice small C2-domain proteins are phosphorylated by calcium-dependent protein kinase.2013 · DOI: 10.1007/s10059-013-2185-0
Direct phosphorylation and activation of a mitogen-activated protein kinase by a calcium-dependent protein kinase in rice.2014 · DOI: 10.1105/tpc.114.126441
Os02g0126400 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024660 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006952 defense response Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051592 response to calcium ion Biological Process
GO:1900425 negative regulation of defense response to bacterium Biological Process
GO:2000032 regulation of secondary shoot formation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT2G17890
ath:AT4G36070
ath:AT5G66210
dosa:Os02g0126400
dosa:Os07g0409900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.514
Rank 1 · LXL04_024660 · OH-1004
Cytoplasm0.288
Rank 2 · LXL04_024660 · OH-1004
Nucleus0.209
Rank 3 · LXL04_024660 · OH-1004
Endoplasmic reticulum0.063
Rank 4 · LXL04_024660 · OH-1004
Golgi apparatus0.061
Rank 5 · LXL04_024660 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase103-363 aa
PF07714.24PK_Tyr_Ser-Thr106-353 aa
PF14531.13Kinase-like187-313 aa
PF13202.13EF-hand_5411-433 aa
PF00036.39EF-hand_1411-437 aa
PF13499.13EF-hand_7411-471 aa
PF13405.13EF-hand_6411-436 aa
PF13833.13EF-hand_8423-471 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_024660PF00069.32Pkinase1033631.3e-69235.2
LXL04_024660PF07714.24PK_Tyr_Ser-Thr1063531.9e-2796.9
LXL04_024660PF14531.13Kinase-like1873134.9e-0626.7
LXL04_024660PF13202.13EF-hand_54114336.2e-2792.5
LXL04_024660PF00036.39EF-hand_14114374.3e-2689.2
LXL04_024660PF13499.13EF-hand_74114713e-2485.9
LXL04_024660PF13405.13EF-hand_64114366.5e-2275.8
LXL04_024660PF13833.13EF-hand_84234718.3e-1451.8
LXL04_024660PF13202.13EF-hand_54915126.2e-2792.5
LXL04_024660PF00036.39EF-hand_14915124.3e-2689.2
LXL04_024660PF13499.13EF-hand_74915443e-2485.9
LXL04_024660PF13405.13EF-hand_64925116.5e-2275.8
LXL04_024660PF13202.13EF-hand_55235446.2e-2792.5
LXL04_024660PF00036.39EF-hand_15245464.3e-2689.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKW4Arabidopsis thalianaCalcium-dependent protein kinase 2881.874%Swiss-Protstrong database homology
Q7XJR9Arabidopsis thalianaCalcium-dependent protein kinase 1671.864%Swiss-Protstrong database homology
Q1PE17Arabidopsis thalianaCalcium-dependent protein kinase 1878.085%Swiss-Protstrong database homology
Q0D715Oryza sativa subsp. japonicaCalcium-dependent protein kinase 1880.426%Swiss-Protstrong database homology
Q6Z2M9Oryza sativa subsp. japonicaCalcium-dependent protein kinase 478.186%Swiss-Protstrong database homology

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