Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1755 bp · LXL04_024652|LXL04_024652|OH1004|cDNA
AAAAGGAAAGCAAGGGCAGTCGAATTACCTTTTCTCTATAAAACACCCTTGCCTTCCTTAACGCTTACTCAAAAGAGTCAAAATAATCGGTTTTGGATCCACCTCCCTTTCCTCACACCCACAAAAACAATCCAAATCTTCTGCTTCAAGGTTCAACAACCCCTAATCCCTCCATCGACGTCACTCACAACCACAACCGACATCATGATCAACGGTGGCGTAACCCCAAATAGGTCACCGGAGGGGGAAATTGATCCCTT...
1707 bp · LXL04_024652|LXL04_024652|OH1004|CDS
TTGCCTTCCTTAACGCTTACTCAAAAGAGTCAAAATAATCGGTTTTGGATCCACCTCCCTTTCCTCACACCCACAAAAACAATCCAAATCTTCTGCTTCAAGGTTCAACAACCCCTAATCCCTCCATCGACGTCACTCACAACCACAACCGACATCATGATCAACGGTGGCGTAACCCCAAATAGGTCACCGGAGGGGGAAATTGATCCCTTCTTACGAGGTTACAACCCTAGCGATCTCCGAACTGCATCTGAGTTTCT...
Protein
Download Protein FASTA568 aa · LXL04_024652|LXL04_024652|OH1004|PROTEIN
MPSLTLTQKSQNNRFWIHLPFLTPTKTIQIFCFKVQQPLIPPSTSLTTTTDIMINGGVTPNRSPEGEIDPFLRGYNPSDLRTASEFLSNWLPFLSKGLCDHCFQSISDRVRSLHPMEHDTEQHHQVQVSTSNRSDLNGTIGNPVNHGGLKDGTDNNDTDDTNSLGSWKDDGVVTPEQTEVTLESENTQSPETLKAPKPRMSWADMAQEEMDEEEEEAKGHFGNSGTEVKAARKPELSREQRERIRFTNVKRKKDFICLER...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024652 |
|---|---|
| TK1151 ID | TkA06G120610 |
| OH-1004 ID | LXL04_024652 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 96.209 / OH-1004 71.479Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024652 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:96002408-96004748 (+) | |||||||||
| Description | Similar to ALKBH9B: RNA demethylase ALKBH9B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001666 response to hypoxia Biological Process GO:0006397 mRNA processing Biological Process GO:0006402 mRNA catabolic process Biological Process GO:0006417 regulation of translation Biological Process GO:0007283 spermatogenesis Biological Process GO:0010228 vegetative to reproductive phase transition of meristem Biological Process GO:0010793 regulation of mRNA export from nucleus Biological Process GO:0030154 cell differentiation Biological Process GO:0043488 regulation of mRNA stability Biological Process GO:0050684 regulation of mRNA processing Biological Process GO:0061157 mRNA destabilization Biological Process GO:0070988 demethylation Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G17970 ath:AT4G02940 mmu:268420 rno:303193 xtr:493400 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13532.132OG-FeII_Oxy_2333-467 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024652 | PF13532.13 | 2OG-FeII_Oxy_2 | 333 | 467 | 4.4e-12 | 47.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.