Gene Card
Gene overview
cDNA / CDS / Protein Sequences
846 bp · LXL04_024618|LXL04_024618|OH1004|cDNA
ATGGCACAGTACGGAAGAGATGAGCAATACGGAAGAGAAGATCGCCAGACTGATGAGTATGGCAACCCTGTTCGGCAAACTGATGAGTACGGAAACCCACTTCACTCCACCACCGGCGGAACCATGGGCGACTATGGTGCCACAGCCACCGGCCACCAGGGGTTAGGTACCCATGTCGGCGGGGGTACAGGAACTCATGATTACGGAACCACCGGTCATCAGGGACTGGGTACTGGGGGTACCGGAACGGATTATAAAAC...
846 bp · LXL04_024618|LXL04_024618|OH1004|CDS
ATGGCACAGTACGGAAGAGATGAGCAATACGGAAGAGAAGATCGCCAGACTGATGAGTATGGCAACCCTGTTCGGCAAACTGATGAGTACGGAAACCCACTTCACTCCACCACCGGCGGAACCATGGGCGACTATGGTGCCACAGCCACCGGCCACCAGGGGTTAGGTACCCATGTCGGCGGGGGTACAGGAACTCATGATTACGGAACCACCGGTCATCAGGGACTGGGTACTGGGGGTACCGGAACGGATTATAAAAC...
Protein
Download Protein FASTA281 aa · LXL04_024618|LXL04_024618|OH1004|PROTEIN
MAQYGRDEQYGREDRQTDEYGNPVRQTDEYGNPLHSTTGGTMGDYGATATGHQGLGTHVGGGTGTHDYGTTGHQGLGTGGTGTDYKTSGGYGSTGHQGLSTGGTGTDYETSGGHATTGHGTDYKTSGGYGSTGHQGLSTGGTGTDYKTSGGHGTTGHHGIGTDVGHDYGTGGDAGSYQNQPSATPLSGGGGGLGAGTEAGYGGVGGAGTGYDRRGGEGYGKKGVTEKIKEKLPGVHSTDEHQRVSTTTAGGVGGGGYGEG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024618 |
|---|---|
| TK1151 ID | TkA06G124290 |
| OH-1004 ID | LXL04_024618 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 50.200 |
| Protein coverage (%) | TK1151 79.747 / OH-1004 88.612Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024618 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:95259375-95260220 (+) | ||||||||||||
| Description | Similar to XERO1: Dehydrin Xero 1 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006970 response to osmotic stress Biological Process GO:0009408 response to heat Biological Process GO:0009409 response to cold Biological Process GO:0009414 response to water deprivation Biological Process GO:0009611 response to wounding Biological Process GO:0009631 cold acclimation Biological Process GO:0009737 response to abscisic acid Biological Process GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid Biological Process GO:0010286 heat acclimation Biological Process GO:0050832 defense response to fungus Biological Process GO:0071465 cellular response to desiccation Biological Process GO:1902075 cellular response to salt Biological Process | ||||||||||||
| KEGG gene cross-reference | ath:AT1G20440 ath:AT3G50980 ath:AT5G66400 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00257.25Dehydrin24-281 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024618 | PF00257.25 | Dehydrin | 24 | 281 | 4.7e-15 | 57.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.