LXL04_024586 | RubberDandelionOmics

Gene overview

LXL04_024586

Reference: OH-1004 Chr: Chr05 Coordinates: 94450760-94453468 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1200 bp · LXL04_024586|LXL04_024586|OH1004|cDNA

ATGGTGAACTTAGTAGCTATACAGCAGCCACTGATTATCAGATTGATGAAAATGGCCGGAGTCCAAACTCACGCCGTCGAAATCGAGCCCGGAACCATCATGAACTTCTGGGTACCAAAAGAAACCATTCAAAAACCCAACAAAAAATCCAAAACCACCGTCGTCACCACAATCGCTCCCAAACCGGAGAAGCCGGTGGTCGTGTTAGTTCATGGTTTCGCTGCGGAGGGCATAGCGACGTGGCAGTTCCAAATTGGCGC...

CDS

Download CDS FASTA

1200 bp · LXL04_024586|LXL04_024586|OH1004|CDS

ATGGTGAACTTAGTAGCTATACAGCAGCCACTGATTATCAGATTGATGAAAATGGCCGGAGTCCAAACTCACGCCGTCGAAATCGAGCCCGGAACCATCATGAACTTCTGGGTACCAAAAGAAACCATTCAAAAACCCAACAAAAAATCCAAAACCACCGTCGTCACCACAATCGCTCCCAAACCGGAGAAGCCGGTGGTCGTGTTAGTTCATGGTTTCGCTGCGGAGGGCATAGCGACGTGGCAGTTCCAAATTGGCGC...

Protein

Download Protein FASTA

399 aa · LXL04_024586|LXL04_024586|OH1004|PROTEIN

MVNLVAIQQPLIIRLMKMAGVQTHAVEIEPGTIMNFWVPKETIQKPNKKSKTTVVTTIAPKPEKPVVVLVHGFAAEGIATWQFQIGALSKQYSVYVPDLLFFGGSISDNPDRSPTFQAKCLVRGLRKLGVERCVVVGFSYGGMVAFKMAELYPEMIRAMVVSGSILAMTDSITELTLKSLGFSSSAELLLPDSVRGLKALLSVATHRKLWFPDRLHKDYLEVMFNNRKERGELLEGLVVSNKDVTIPYFPQRIHLLWGEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024586`
TK1151 ID	TkA06G127760
OH-1004 ID	LXL04_024586
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.000
Protein coverage (%)	TK1151 99.000 / OH-1004 74.436 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_024586`
Location	Chr05:94450760-94453468 (+)
Description	Similar to ephx3: Epoxide hydrolase 3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024586` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006629 lipid metabolic process Biological Process GO:0097176 epoxide metabolic process Biological Process GO:0016020 membrane Cellular Component GO:0043231 intracellular membrane-bounded organelle Cellular Component GO:0004301 epoxide hydrolase activity Molecular Function GO:0016787 hydrolase activity Molecular Function
KEGG gene cross-reference	cel:CELE_K02F3.6 hsa:253152 hsa:79852 mmu:384214 xtr:779884 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.292

Rank 1 · LXL04_024586 · OH-1004

Plastid0.222

Rank 2 · LXL04_024586 · OH-1004

Cytoplasm0.158

Rank 3 · LXL04_024586 · OH-1004

Nucleus0.115

Rank 4 · LXL04_024586 · OH-1004

Cell membrane0.114

Rank 5 · LXL04_024586 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12146.16Hydrolase_464-296 aa

PF00561.27Abhydrolase_165-297 aa

PF12697.14Abhydrolase_667-302 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024586	`PF12146.16`	Hydrolase_4	64	296	2.3e-07	31.1
LXL04_024586	`PF00561.27`	Abhydrolase_1	65	297	4.9e-24	86.1
LXL04_024586	`PF12697.14`	Abhydrolase_6	67	302	6.8e-16	60.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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