LXL04_024293 | RubberDandelionOmics

Gene overview

LXL04_024293

Reference: OH-1004 Chr: Chr05 Coordinates: 86685111-86686295 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

636 bp · LXL04_024293|LXL04_024293|OH1004|cDNA

ATGCTGTTCTTGGCACTTTCATGGACCTTCGTCTTCCAACCTTCACAGAAACAAGTCCTCCTACAATTACGAAAACAGCTCGAATACCCGAAGCAATTAGACATTTGGCTCGATTCAAGTAACGATTTCTGCTACGTTTCTTCGCCGCAAGTCAATGTCACTTGCGAAAACAATTTCGTTTCGGAGCTTAAAATCATCGGGATTCCAGTCGATCAAACGCCGACGAAGGTAATAAACTCCGGTTTATTTCATCGGTTTCC...

CDS

Download CDS FASTA

636 bp · LXL04_024293|LXL04_024293|OH1004|CDS

ATGCTGTTCTTGGCACTTTCATGGACCTTCGTCTTCCAACCTTCACAGAAACAAGTCCTCCTACAATTACGAAAACAGCTCGAATACCCGAAGCAATTAGACATTTGGCTCGATTCAAGTAACGATTTCTGCTACGTTTCTTCGCCGCAAGTCAATGTCACTTGCGAAAACAATTTCGTTTCGGAGCTTAAAATCATCGGGATTCCAGTCGATCAAACGCCGACGAAGGTAATAAACTCCGGTTTATTTCATCGGTTTCC...

Protein

Download Protein FASTA

211 aa · LXL04_024293|LXL04_024293|OH1004|PROTEIN

MLFLALSWTFVFQPSQKQVLLQLRKQLEYPKQLDIWLDSSNDFCYVSSPQVNVTCENNFVSELKIIGIPVDQTPTKVINSGLFHRFPVSSQTISQNFSIDSLIATLSRLTSLKVLSLVSLGIWAPLPNKIQRLNTLEYIDLSYDFLYVSIPPTFSRMVSLQSVNLDGNKLVKTTQSKLLSNDPNIIGTIRVASGIPGHILRPAPNGINSKS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024293`
TK1151 ID	TkA06G155950
OH-1004 ID	LXL04_024293
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.500
Protein coverage (%)	TK1151 94.475 / OH-1004 81.043 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024293

Location Chr05:86685111-86686295 (+)

Description Similar to At3g03770: Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03770`	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770.	No verified direct reference in this release
`At1g14390`	Probable LRR receptor-like serine/threonine-protein kinase At1g14390.	No verified direct reference in this release
`At2g02780`	Probable LRR receptor-like serine/threonine-protein kinase At2g02780.	No verified direct reference in this release
`At3g12145`	Promotes flowering transition in long days (LD).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0568700`	Inhibitor of fungal polygalacturonase.	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice.2003 · DOI: 10.1023/b:plan.0000006940.89955.f1

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024293 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0048574 long-day photoperiodism, flowering Biological Process

GO:0048833 specification of floral organ number Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G14390

ath:AT2G02780

ath:AT3G03770

ath:AT3G12145

dosa:Os07g0568700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.211

Rank 1 · LXL04_024293 · OH-1004

Cell membrane0.192

Rank 2 · LXL04_024293 · OH-1004

Extracellular0.157

Rank 3 · LXL04_024293 · OH-1004

Lysosome / Vacuole0.143

Rank 4 · LXL04_024293 · OH-1004

Cytoplasm0.126

Rank 5 · LXL04_024293 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LFN2`	Arabidopsis thaliana	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	38.298%	Swiss-Prot	moderate database homology
`Q9M9S4`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g14390	31.606%	Swiss-Prot	moderate database homology
`C0LGJ9`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At2g02780	34.395%	Swiss-Prot	moderate database homology
`Q9LH52`	Arabidopsis thaliana	Leucine-rich repeat protein FLOR 1	24.742%	Swiss-Prot	weak database homology
`Q8GT95`	Oryza sativa subsp. japonica	Polygalacturonase inhibitor 1	27.586%	Swiss-Prot	weak database homology

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