LXL04_024259 | RubberDandelionOmics

Gene overview

LXL04_024259

Reference: OH-1004 Chr: Chr05 Coordinates: 86027636-86030067 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

507 bp · LXL04_024259|LXL04_024259|OH1004|cDNA

ATGCCTCAAGATCTCATCGCCGCCGCCGCCATTGCCTCCGCCGCTGTGTCGTTGCCGCCGCCGCCATTGCCGCCGCCGCCGTTACCGCCGCTGCGTCCAGATCTAGTAGCCGTCGTTGTTATTGAGACTATTTTTTGTGAAACACGCATTAAGATCAATAATTTGGATTTAATAAAAGAAAGGGGTTATAGTCGATCTCGAATCTCTTCACGTGCCATTGAAGCATTCCTGATTCAGATACTGAAAACTGGTTTCTTTAA...

CDS

Download CDS FASTA

507 bp · LXL04_024259|LXL04_024259|OH1004|CDS

ATGCCTCAAGATCTCATCGCCGCCGCCGCCATTGCCTCCGCCGCTGTGTCGTTGCCGCCGCCGCCATTGCCGCCGCCGCCGTTACCGCCGCTGCGTCCAGATCTAGTAGCCGTCGTTGTTATTGAGACTATTTTTTGTGAAACACGCATTAAGATCAATAATTTGGATTTAATAAAAGAAAGGGGTTATAGTCGATCTCGAATCTCTTCACGTGCCATTGAAGCATTCCTGATTCAGATACTGAAAACTGGTTTCTTTAA...

Protein

Download Protein FASTA

168 aa · LXL04_024259|LXL04_024259|OH1004|PROTEIN

MPQDLIAAAAIASAAVSLPPPPLPPPPLPPLRPDLVAVVVIETIFCETRIKINNLDLIKERGYSRSRISSRAIEAFLIQILKTGFFNGDPHLAIDSDESLIYYVFGMMGEIKSFTREILMDLFYANYEKDAKKVMKSLISLEALQPTGDIMFDKSCSTSTYRRHDSSM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024259`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024259

Location Chr05:86027636-86030067 (-)

Description Similar to ABC1K7: Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07700`	Involved in resistance to oxidative stress.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046
`At5g64940`	May participate in responses to oxidative stress, high light and heavy metals.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024259 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0010150 leaf senescence Biological Process

GO:0034599 cellular response to oxidative stress Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046467 membrane lipid biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:1901031 regulation of response to reactive oxygen species Biological Process

GO:1990641 response to iron ion starvation Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT3G07700

ath:AT5G64940

syn:sll0005

syn:sll0095

syn:sll1770

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.234

Rank 1 · LXL04_024259 · OH-1004

Nucleus0.149

Rank 2 · LXL04_024259 · OH-1004

Extracellular0.149

Rank 3 · LXL04_024259 · OH-1004

Mitochondrion0.148

Rank 4 · LXL04_024259 · OH-1004

Endoplasmic reticulum0.140

Rank 5 · LXL04_024259 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03109.23ABC150-137 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024259	`PF03109.23`	ABC1	50	137	1.4e-16	61.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B9DGY1`	Arabidopsis thaliana	Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic	74.038%	Swiss-Prot	moderate database homology
`Q93Y08`	Arabidopsis thaliana	Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic	43.396%	Swiss-Prot	moderate database homology

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