LXL04_024200 | RubberDandelionOmics

Gene overview

LXL04_024200

Reference: OH-1004 Chr: Chr05 Coordinates: 84450463-84454433 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2571 bp · LXL04_024200|LXL04_024200|OH1004|cDNA

ATGCAGAGCTCGTCAACGAGCTCTGTGGCGCAACCTGAAGCCATACTAGATTGGCTTCAGAAGGAAATGGGATATAGACCTCTAGGTCCTTACATTGCTTCAAGTAAAGCATCAATGCCTTCATCTGATGCAATTCGTAGGGTTTGCCGTGGGAATATGATTCCTGTTTGGAACTTTTTACTGAACAGGGTTAAATCTGAGAAGACGGTTGATAATATCCGTCGTAACATCCTGGTTCACGGCGGAAAGGAAAACGCTGC...

CDS

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2571 bp · LXL04_024200|LXL04_024200|OH1004|CDS

ATGCAGAGCTCGTCAACGAGCTCTGTGGCGCAACCTGAAGCCATACTAGATTGGCTTCAGAAGGAAATGGGATATAGACCTCTAGGTCCTTACATTGCTTCAAGTAAAGCATCAATGCCTTCATCTGATGCAATTCGTAGGGTTTGCCGTGGGAATATGATTCCTGTTTGGAACTTTTTACTGAACAGGGTTAAATCTGAGAAGACGGTTGATAATATCCGTCGTAACATCCTGGTTCACGGCGGAAAGGAAAACGCTGC...

Protein

Download Protein FASTA

856 aa · LXL04_024200|LXL04_024200|OH1004|PROTEIN

MQSSSTSSVAQPEAILDWLQKEMGYRPLGPYIASSKASMPSSDAIRRVCRGNMIPVWNFLLNRVKSEKTVDNIRRNILVHGGKENAAAAADSGVETAKSGESGRRSRGGRRKEKVAIAGESNSRETALQERESAEKEVERLRHMVRRQRKELKARMLEVSREEAERKRMLDERSNYRHKQVMLDAYDQQCDEAAMIFSEYHKRLRSYVNQVKSAQKLDTDSSMEVVTSFQTNNEKEDIYSTVKGSKPSDDLILIETNRER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024200`
TK1151 ID	TkA06G165020
OH-1004 ID	LXL04_024200
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.800
Protein coverage (%)	TK1151 93.769 / OH-1004 72.079 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024200

Location Chr05:84450463-84454433 (+)

Description Similar to AUG5: AUGMIN subunit 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g38880`	Involved in microtubules reorganization during spindle and phragmoplast development.	Characterization of the Arabidopsis augmin complex uncovers its critical function in the assembly of the acentrosomal spindle and phragmoplast microtubule arrays.2012 · DOI: 10.1105/tpc.112.096610

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024200 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0051225 spindle assembly Biological Process

GO:0051301 cell division Biological Process

GO:0005876 spindle microtubule Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0070652 HAUS complex Cellular Component

GO:0051011 microtubule minus-end binding Molecular Function

KEGG gene cross-reference

ath:AT5G38880

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.468

Rank 1 · LXL04_024200 · OH-1004

Nucleus0.383

Rank 2 · LXL04_024200 · OH-1004

Cell membrane0.094

Rank 3 · LXL04_024200 · OH-1004

Golgi apparatus0.088

Rank 4 · LXL04_024200 · OH-1004

Mitochondrion0.070

Rank 5 · LXL04_024200 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14817.12HAUS512-772 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024200	`PF14817.12`	HAUS5	12	772	1.4e-236	788.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMB4`	Arabidopsis thaliana	AUGMIN subunit 5	67.551%	Swiss-Prot	strong database homology

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