LXL04_024185 | RubberDandelionOmics

Gene overview

LXL04_024185

Reference: OH-1004 Chr: Chr05 Coordinates: 83605957-83610034 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1335 bp · LXL04_024185|LXL04_024185|OH1004|cDNA

ATGACGACGGTCGTGCCTACATCCGAGGAGGATCCCATCCTCTCTGTCGTTCGTTTTACCGCCGAGATGTCCTGGGCTGAAGCCGGTGCTGAGGTAGCTGAACCACAAGTTGCTAGTTTATGCTTGGAGGCTCAAGAATGCATGATTGCTGGCAGATGGTTCGATTTGGCTTCGCTGATGCTGACTTCGGCTGAGTTGGTGTTTCCGAAAGCTTCGGATAAAGATCTCGAGTGCATCTTCACCATCATCTGCAATCTTGT...

CDS

Download CDS FASTA

1335 bp · LXL04_024185|LXL04_024185|OH1004|CDS

ATGACGACGGTCGTGCCTACATCCGAGGAGGATCCCATCCTCTCTGTCGTTCGTTTTACCGCCGAGATGTCCTGGGCTGAAGCCGGTGCTGAGGTAGCTGAACCACAAGTTGCTAGTTTATGCTTGGAGGCTCAAGAATGCATGATTGCTGGCAGATGGTTCGATTTGGCTTCGCTGATGCTGACTTCGGCTGAGTTGGTGTTTCCGAAAGCTTCGGATAAAGATCTCGAGTGCATCTTCACCATCATCTGCAATCTTGT...

Protein

Download Protein FASTA

444 aa · LXL04_024185|LXL04_024185|OH1004|PROTEIN

MTTVVPTSEEDPILSVVRFTAEMSWAEAGAEVAEPQVASLCLEAQECMIAGRWFDLASLMLTSAELVFPKASDKDLECIFTIICNLVKKPESLDEMLEMAKLLSSKVAQQPNDKPALRLKLLFNLYNLLENPYSRFYVYMNALKLALNGKVIEHIIPSFKNIDSFLKEWNLGVHDQRELFLTISNVLKEHKSSTKETFKFLTKYLATFPGDDAHGMEEAKEEAAYTIIEFVKAPDMFQHDLLDMPAVSQLEKDTKYASIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024185`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_024185`
Location	Chr05:83605957-83610034 (+)
Description	Similar to eif3m: Eukaryotic translation initiation factor 3 subunit M
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024185` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0001732 formation of cytoplasmic translation initiation complex Biological Process GO:0002183 cytoplasmic translational initiation Biological Process GO:0006413 translational initiation Biological Process GO:0005829 cytosol Cellular Component GO:0005852 eukaryotic translation initiation factor 3 complex Cellular Component GO:0016282 eukaryotic 43S preinitiation complex Cellular Component GO:0033290 eukaryotic 48S preinitiation complex Cellular Component GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m Cellular Component GO:0003743 translation initiation factor activity Molecular Function GO:0031369 translation initiation factor binding Molecular Function
KEGG gene cross-reference	bta:515543 ddi:DDB_G0287005 gga:421602 hsa:10480 pon:100173112 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.719

Rank 1 · LXL04_024185 · OH-1004

Nucleus0.265

Rank 2 · LXL04_024185 · OH-1004

Golgi apparatus0.118

Rank 3 · LXL04_024185 · OH-1004

Cell membrane0.111

Rank 4 · LXL04_024185 · OH-1004

Lysosome / Vacuole0.097

Rank 5 · LXL04_024185 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01399.34PCI282-359 aa

PF18005.7eIF3m_C_helix363-391 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024185	`PF01399.34`	PCI	282	359	2.7e-13	50.7
LXL04_024185	`PF18005.7`	eIF3m_C_helix	363	391	1.8e-13	50.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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