LXL04_024098 | RubberDandelionOmics

Gene overview

LXL04_024098

Reference: OH-1004 Chr: Chr05 Coordinates: 81085492-81086239 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

597 bp · LXL04_024098|LXL04_024098|OH1004|cDNA

ATGGGTGTATATAAGACCTCAAAACTAAGCCTCTCTCGGTTTAAACCAAAACCATTTCACACGACACGCATGCTCACACGGATTCATGTGCACGCCGTCTGCGATTCACGATGCCCTAACAATTCTCTACACGCCTTTCTCGATTCTCTCTTGCACGCCCTTCTCTGCACATACCAATACAATTCAAATGGCACTTCAAAAGGAACCATCTTCCCTATTCTGAATCGGAGAGTTCCGATATCTTCCCTAATAATGAGCGA...

CDS

Download CDS FASTA

597 bp · LXL04_024098|LXL04_024098|OH1004|CDS

ATGGGTGTATATAAGACCTCAAAACTAAGCCTCTCTCGGTTTAAACCAAAACCATTTCACACGACACGCATGCTCACACGGATTCATGTGCACGCCGTCTGCGATTCACGATGCCCTAACAATTCTCTACACGCCTTTCTCGATTCTCTCTTGCACGCCCTTCTCTGCACATACCAATACAATTCAAATGGCACTTCAAAAGGAACCATCTTCCCTATTCTGAATCGGAGAGTTCCGATATCTTCCCTAATAATGAGCGA...

Protein

Download Protein FASTA

198 aa · LXL04_024098|LXL04_024098|OH1004|PROTEIN

MGVYKTSKLSLSRFKPKPFHTTRMLTRIHVHAVCDSRCPNNSLHAFLDSLLHALLCTYQYNSNGTSKGTIFPILNRRVPISSLIMSEREMATSSVTATGFSSSFHGSWGTSMAGEDYGALVAKTTPKLVRIGNPLRYGPMMGNVNEGKGPFAPVVVVTRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADSKQRQG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024098`
TK1151 ID	TkA06G402580
OH-1004 ID	LXL04_024098
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.400
Protein coverage (%)	TK1151 100.000 / OH-1004 55.051 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024098

Location Chr05:81085492-81086239 (+)

Description Similar to PGR5: Protein PROTON GRADIENT REGULATION 5, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g05620`	Critical for growth under fluctuating-light conditions.	PGR5 is involved in cyclic electron flow around photosystem I and is essential for photoprotection in Arabidopsis.2002 · DOI: 10.1016/s0092-8674(02)00867-x The role of PGR5 in the redox poising of photosynthetic electron transport.2007 · DOI: 10.1016/j.bbabio.2007.07.007 A balanced PGR5 level is required for chloroplast development and optimum operation of cyclic electron transport around photosystem I.2007 · DOI: 10.1093/pcp/pcm116 Genetic characterization of a flap1 null mutation in Arabidopsis npq4 and pgr5 plants suggests that the regulatory role of FLAP1 involves the control of proton homeostasis in chloroplasts.2019 · DOI: 10.1007/s11120-018-0575-z Arabidopsis mutants lacking DLDG1 and non-photochemical quenching-related proteins reveal the regulatory role of DLDG1 in chloroplast pH homeostasis.2023 · DOI: 10.1002/1873-3468.14687

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024098 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0009773 photosynthetic electron transport in photosystem I Biological Process

GO:0010117 photoprotection Biological Process

GO:0071484 cellular response to light intensity Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009055 electron transfer activity Molecular Function

KEGG gene cross-reference

ath:AT2G05620

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.387

Rank 1 · LXL04_024098 · OH-1004

Nucleus0.200

Rank 2 · LXL04_024098 · OH-1004

Cytoplasm0.193

Rank 3 · LXL04_024098 · OH-1004

Plastid0.181

Rank 4 · LXL04_024098 · OH-1004

Cell membrane0.050

Rank 5 · LXL04_024098 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SL05`	Arabidopsis thaliana	Protein PROTON GRADIENT REGULATION 5, chloroplastic	64.103%	Swiss-Prot	moderate database homology

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