LXL04_024077 | RubberDandelionOmics

Gene overview

LXL04_024077

Reference: OH-1004 Chr: Chr05 Coordinates: 80162001-80162476 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

411 bp · LXL04_024077|LXL04_024077|OH1004|cDNA

ATGAAGTCAGAATATCCTAATGTATTCTATTCAAGATTAAACGAGTTTCATATATTCTTACAAGTTTCAGTTCCCAATAACAGTCATTTAGCAAGCACATACTGTGCATTAGCCATATTGAAGACATTTGGCTATGACTTTTCTTTTATCAACTCCAGTTCAATTTTGAAGTCAATGAAATGTCTTCAACAATCTGATGGAAGTTTCATGCCCATTCATACAGGGGCAGAAACGGATTTACGGTTTGTATATTGTGCTGG...

CDS

Download CDS FASTA

411 bp · LXL04_024077|LXL04_024077|OH1004|CDS

ATGAAGTCAGAATATCCTAATGTATTCTATTCAAGATTAAACGAGTTTCATATATTCTTACAAGTTTCAGTTCCCAATAACAGTCATTTAGCAAGCACATACTGTGCATTAGCCATATTGAAGACATTTGGCTATGACTTTTCTTTTATCAACTCCAGTTCAATTTTGAAGTCAATGAAATGTCTTCAACAATCTGATGGAAGTTTCATGCCCATTCATACAGGGGCAGAAACGGATTTACGGTTTGTATATTGTGCTGG...

Protein

Download Protein FASTA

136 aa · LXL04_024077|LXL04_024077|OH1004|PROTEIN

MKSEYPNVFYSRLNEFHIFLQVSVPNNSHLASTYCALAILKTFGYDFSFINSSSILKSMKCLQQSDGSFMPIHTGAETDLRFVYCAGNYTPCFFPILIFFSRMIYFIVSRLIFQLLFLLFWMTRVAWIKRKLKIIY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024077`
TK1151 ID	TkA07G186360
OH-1004 ID	LXL04_024077
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	68.700
Protein coverage (%)	TK1151 82.857 / OH-1004 84.559 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024077

Location Chr05:80162001-80162476 (-)

Description Similar to GGB: Geranylgeranyl transferase type-1 subunit beta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39550`	Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X (CaaX).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024077 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0018344 protein geranylgeranylation Biological Process

GO:0045787 positive regulation of cell cycle Biological Process

GO:0080120 CAAX-box protein maturation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005953 CAAX-protein geranylgeranyltransferase complex Cellular Component

GO:0004661 protein geranylgeranyltransferase activity Molecular Function

GO:0004662 CAAX-protein geranylgeranyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G39550

bta:509322

hsa:5229

mmu:225467

rno:81746

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.273

Rank 1 · LXL04_024077 · OH-1004

Mitochondrion0.242

Rank 2 · LXL04_024077 · OH-1004

Nucleus0.160

Rank 3 · LXL04_024077 · OH-1004

Endoplasmic reticulum0.157

Rank 4 · LXL04_024077 · OH-1004

Peroxisome0.140

Rank 5 · LXL04_024077 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00432.28Prenyltrans25-87 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024077	`PF00432.28`	Prenyltrans	25	87	6e-15	56.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80642`	Arabidopsis thaliana	Geranylgeranyl transferase type-1 subunit beta	60.465%	Swiss-Prot	moderate database homology

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