LXL04_024042 | RubberDandelionOmics

Gene overview

LXL04_024042

Reference: OH-1004 Chr: Chr05 Coordinates: 78478541-78483418 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3582 bp · LXL04_024042|LXL04_024042|OH1004|cDNA

ATGGGTCGGCTACCAAGGAAAAAGAGAAGTGTGACATTGATTAGGAATCATTCTGAAGAATATCTTGCAAATTTACATGTTGACTTCCATGAATATGATAGGCCTATTGGAAAGAATCGGTTTAAATTCGCCAGTTATCGTGGAGTAACTACAAGGAAGATGATTTCTATCCTGGTAAAAAGTTGGGATGTAGTAGATGAGTGTGACAAGGATCAACTGTGGCTGAACATAAAGGAAATAAGAAGAAAAGGGAGTGAGAC...

CDS

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3582 bp · LXL04_024042|LXL04_024042|OH1004|CDS

ATGGGTCGGCTACCAAGGAAAAAGAGAAGTGTGACATTGATTAGGAATCATTCTGAAGAATATCTTGCAAATTTACATGTTGACTTCCATGAATATGATAGGCCTATTGGAAAGAATCGGTTTAAATTCGCCAGTTATCGTGGAGTAACTACAAGGAAGATGATTTCTATCCTGGTAAAAAGTTGGGATGTAGTAGATGAGTGTGACAAGGATCAACTGTGGCTGAACATAAAGGAAATAAGAAGAAAAGGGAGTGAGAC...

Protein

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1193 aa · LXL04_024042|LXL04_024042|OH1004|PROTEIN

MGRLPRKKRSVTLIRNHSEEYLANLHVDFHEYDRPIGKNRFKFASYRGVTTRKMISILVKSWDVVDECDKDQLWLNIKEIRRKGSETAKQNKNHPRLGSSGYRGMESKWDEEVNYGVTIKAHKIQSKRARYFIFARRKHLGIEFSQGDFSGSRYDVLTEVIGPEHPGRTRGVGDNIGLKQSKIFNRKKKTQEQQMKEKLEESMINDSFYDKMKDKLLADIVDKIVLVVVTAVMQHMEVTNVSTIVGSKTSTTVLDELHNI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024042`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024042

Location Chr05:78478541-78483418 (+)

Description Similar to ASA1: Anthranilate synthase alpha subunit 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05730`	Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan.	A Link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis.2005 · DOI: 10.1105/tpc.105.033365 Arabidopsis ASA1 is important for jasmonate-mediated regulation of auxin biosynthesis and transport during lateral root formation.2009 · DOI: 10.1105/tpc.108.064303
`At2g29690`	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XNK3`	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan.	No verified direct reference in this release
`Os03g0826500`	Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan.	Characterization of rice anthranilate synthase alpha-subunit genes OASA1 and OASA2. Tryptophan accumulation in transgenic rice expressing a feedback-insensitive mutant of OASA1.2001 · DOI: 10.1104/pp.126.4.1493 In vitro reconstitution of rice anthranilate synthase: distinct functional properties of the alpha subunits OASA1 and OASA2.2004 · DOI: 10.1023/b:plan.0000028729.79034.07
`Os03g0264400`	Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan.	In vitro reconstitution of rice anthranilate synthase: distinct functional properties of the alpha subunits OASA1 and OASA2.2004 · DOI: 10.1023/b:plan.0000028729.79034.07

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024042 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000162 L-tryptophan biosynthetic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009851 auxin biosynthetic process Biological Process

GO:0010311 lateral root formation Biological Process

GO:0010600 regulation of auxin biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005950 anthranilate synthase complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004049 anthranilate synthase activity Molecular Function

KEGG gene cross-reference

ath:AT2G29690

ath:AT5G05730

dosa:Os03g0264400

dosa:Os03g0826500

osa:4332341

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.489

Rank 1 · LXL04_024042 · OH-1004

Cytoplasm0.395

Rank 2 · LXL04_024042 · OH-1004

Mitochondrion0.095

Rank 3 · LXL04_024042 · OH-1004

Cell membrane0.055

Rank 4 · LXL04_024042 · OH-1004

Endoplasmic reticulum0.049

Rank 5 · LXL04_024042 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00425.26Chorismate_bind857-943 aa

PF26133.1DUF80391130-1177 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024042	`PF00425.26`	Chorismate_bind	857	943	2.7e-06	27.8
LXL04_024042	`PF26133.1`	DUF8039	1130	1177	2.1e-10	41.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P32068`	Arabidopsis thaliana	Anthranilate synthase alpha subunit 1, chloroplastic	50.000%	Swiss-Prot	weak database homology
`P32069`	Arabidopsis thaliana	Anthranilate synthase alpha subunit 2, chloroplastic	40.777%	Swiss-Prot	weak database homology
`A2XNK3`	Oryza sativa subsp. indica	Anthranilate synthase alpha subunit 1, chloroplastic	46.250%	Swiss-Prot	weak database homology
`Q94GF1`	Oryza sativa subsp. japonica	Anthranilate synthase alpha subunit 1, chloroplastic	46.250%	Swiss-Prot	weak database homology
`Q9XJ29`	Oryza sativa subsp. japonica	Anthranilate synthase alpha subunit 2, chloroplastic	41.250%	Swiss-Prot	weak database homology

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