LXL04_024011 | RubberDandelionOmics

Gene overview

LXL04_024011

Reference: OH-1004 Chr: Chr05 Coordinates: 77746318-77748112 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1044 bp · LXL04_024011|LXL04_024011|OH1004|cDNA

ATGGGAGGGGCAATAAAGTCTTTTATCGAAAAGGCATTGCCCTTTGCGGCTATGGTGTTTGTAGAATGTGGTGAAGTCGGGATGATTACATTAGGTAAAGCGGCCATGAATGTTGGACTAAGCAGTCTCGTGTATGTTGTTTACTATAATGCCCTTGGCACCGTCATTCTTCTTCCTGGTTTTATCCTCCACACCTCCAGAAATAATCGACCCTCTCTCACGTTATCGGTCCTTTGTAAAATATTTGGGCTTGGATTCTT...

CDS

Download CDS FASTA

1044 bp · LXL04_024011|LXL04_024011|OH1004|CDS

ATGGGAGGGGCAATAAAGTCTTTTATCGAAAAGGCATTGCCCTTTGCGGCTATGGTGTTTGTAGAATGTGGTGAAGTCGGGATGATTACATTAGGTAAAGCGGCCATGAATGTTGGACTAAGCAGTCTCGTGTATGTTGTTTACTATAATGCCCTTGGCACCGTCATTCTTCTTCCTGGTTTTATCCTCCACACCTCCAGAAATAATCGACCCTCTCTCACGTTATCGGTCCTTTGTAAAATATTTGGGCTTGGATTCTT...

Protein

Download Protein FASTA

347 aa · LXL04_024011|LXL04_024011|OH1004|PROTEIN

MGGAIKSFIEKALPFAAMVFVECGEVGMITLGKAAMNVGLSSLVYVVYYNALGTVILLPGFILHTSRNNRPSLTLSVLCKIFGLGFLGICLLQVSAYTGIGYSSPTLAAALGNLIPAFTFLLAVIFRLEKFNIKKATSRAKALGTIVAITGAFVMTFYQGPPLFNMNRNHNSHENLLSFSSQNSKWVLGGFLIAITALCSSSWNVFQTATVKEFPDQVTVVFLFCLFGTIQTAIITVILERNTNVWILDKRTEFISIVFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024011`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024011

Location Chr05:77746318-77748112 (+)

Description Similar to At5g40230: WAT1-related protein At5g40230

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40230`	WAT1-related protein At5g40230.	No verified direct reference in this release
`At5g40240`	WAT1-related protein At5g40240.	No verified direct reference in this release
`At3g28050`	WAT1-related protein At3g28050.	No verified direct reference in this release
`At4g15540`	WAT1-related protein At4g15540.	No verified direct reference in this release
`At3g28130`	WAT1-related protein At3g28130.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024011 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0090461 intracellular glutamate homeostasis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005313 L-glutamate transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G28050

ath:AT3G28130

ath:AT4G15540

ath:AT5G40230

ath:AT5G40240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.441

Rank 1 · LXL04_024011 · OH-1004

Lysosome / Vacuole0.232

Rank 2 · LXL04_024011 · OH-1004

Endoplasmic reticulum0.177

Rank 3 · LXL04_024011 · OH-1004

Golgi apparatus0.075

Rank 4 · LXL04_024011 · OH-1004

Cytoplasm0.070

Rank 5 · LXL04_024011 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892.27EamA29-156 aa

PF00892.27EamA189-326 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024011	`PF00892.27`	EamA	29	156	1.8e-21	77.5
LXL04_024011	`PF00892.27`	EamA	189	326	1.8e-21	77.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4KHA8`	Arabidopsis thaliana	WAT1-related protein At5g40230	43.103%	Swiss-Prot	moderate database homology
`Q9FL08`	Arabidopsis thaliana	WAT1-related protein At5g40240	41.143%	Swiss-Prot	moderate database homology
`Q94JU2`	Arabidopsis thaliana	WAT1-related protein At3g28050	41.593%	Swiss-Prot	moderate database homology
`F4JK59`	Arabidopsis thaliana	WAT1-related protein At4g15540	40.407%	Swiss-Prot	moderate database homology
`Q56X95`	Arabidopsis thaliana	WAT1-related protein At3g28130	40.233%	Swiss-Prot	moderate database homology

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