Gene Card
Gene overview
cDNA / CDS / Protein Sequences
882 bp · LXL04_023951|LXL04_023951|OH1004|cDNA
ATGCTCAAAGATTATTCAATCCTTCTTCTTCCCCACCACCAATCACAAAAAGTGCCTAGCAGTAAGCTCCCAAAGGGACGTCATTTGAGCGATGATCGTGTTTCATATGATATAGATGTTAGGTTGCCGGGAGAGGGTCAGCCTCAACTTGACGTCACTCCCATTACCAAGTATGGGTCTGATCCTGGTCTCGTTGTGGGTCGTCAGATTGCTGTTAACAAGGCTTATATATGTTATGGTTTGAAACTGGGAGCAATCAG...
882 bp · LXL04_023951|LXL04_023951|OH1004|CDS
ATGCTCAAAGATTATTCAATCCTTCTTCTTCCCCACCACCAATCACAAAAAGTGCCTAGCAGTAAGCTCCCAAAGGGACGTCATTTGAGCGATGATCGTGTTTCATATGATATAGATGTTAGGTTGCCGGGAGAGGGTCAGCCTCAACTTGACGTCACTCCCATTACCAAGTATGGGTCTGATCCTGGTCTCGTTGTGGGTCGTCAGATTGCTGTTAACAAGGCTTATATATGTTATGGTTTGAAACTGGGAGCAATCAG...
Protein
Download Protein FASTA293 aa · LXL04_023951|LXL04_023951|OH1004|PROTEIN
MLKDYSILLLPHHQSQKVPSSKLPKGRHLSDDRVSYDIDVRLPGEGQPQLDVTPITKYGSDPGLVVGRQIAVNKAYICYGLKLGAIRVLNIHTALRSLLKRVTDMCKHRWTCLCVEDTEGTDEDDKPQITGKIIVAIQITGEGESVHPRVKVNVNGQWSPVHPLNYRIGSVTNDNKFNVSCNVLKPGSTRPVQPVGLGPGGETGFKQISARINPDGFYRTGRSNRPQNTDQPPLSSQSISEAEAKFKQISEAYDVLSDPK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023951 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023951 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:75285391-75287214 (-) | |||||||||
| Description | Similar to VCS: Enhancer of mRNA-decapping protein 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0006397 mRNA processing Biological Process GO:0006402 mRNA catabolic process Biological Process GO:0006457 protein folding Biological Process GO:0006986 response to unfolded protein Biological Process GO:0007186 G protein-coupled receptor signaling pathway Biological Process GO:0009791 post-embryonic development Biological Process GO:0009965 leaf morphogenesis Biological Process GO:0010071 root meristem specification Biological Process GO:0010072 primary shoot apical meristem specification Biological Process GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA Biological Process GO:0034605 cellular response to heat Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT3G13290 ath:AT3G13300 bta:538426 bta:540083 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00226.37DnaJ238-266 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023951 | PF00226.37 | DnaJ | 238 | 266 | 3.3e-09 | 37.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.