LXL04_023948 | RubberDandelionOmics

Gene overview

LXL04_023948

Reference: OH-1004 Chr: Chr05 Coordinates: 75139984-75141879 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

669 bp · LXL04_023948|LXL04_023948|OH1004|cDNA

ATGGGGTACATCGCAGTTTCCAACGATCAATTCAGTAATTCCATCGGACGCCGTGAAATATGCGTTGTGTGGCGCGGATCATTACGAAATTACGAGTTTCTTGACGATTTTTTAGGTGCCAAGATGGTATCAATGGAGCCGATACTCCCTCACGATACATCTAAAACCGCACCAAAAGTAATGGAAGGATGGCTTACTGTGTACAACACCAGCGACCCAGATTCCGAATTCGTGAAATTAAGTGCGAGAACACAGCTTTT...

CDS

Download CDS FASTA

669 bp · LXL04_023948|LXL04_023948|OH1004|CDS

ATGGGGTACATCGCAGTTTCCAACGATCAATTCAGTAATTCCATCGGACGCCGTGAAATATGCGTTGTGTGGCGCGGATCATTACGAAATTACGAGTTTCTTGACGATTTTTTAGGTGCCAAGATGGTATCAATGGAGCCGATACTCCCTCACGATACATCTAAAACCGCACCAAAAGTAATGGAAGGATGGCTTACTGTGTACAACACCAGCGACCCAGATTCCGAATTCGTGAAATTAAGTGCGAGAACACAGCTTTT...

Protein

Download Protein FASTA

222 aa · LXL04_023948|LXL04_023948|OH1004|PROTEIN

MGYIAVSNDQFSNSIGRREICVVWRGSLRNYEFLDDFLGAKMVSMEPILPHDTSKTAPKVMEGWLTVYNTSDPDSEFVKLSARTQLLTQIKELLDKFKDEKVSITLAGHSLASYLYTLSPIAKVPSTNRKFAMGDATQSRFKPPPEFKEVERAPVIERWALLKLHVLFDLILFARKAHASLAYVDKIRDQNSKVDNEEIEAAAWMCSQSLNTNVVVDVLTIT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023948`
TK1151 ID	TkA01G467540
OH-1004 ID	LXL04_023948
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	58.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023948

Location Chr05:75139984-75141879 (+)

Description Similar to Os01g0652300: Phospholipase A1-II 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42690`	Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine (PC) at the sn-1 position.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0652300`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release
`UniProt: A2WT96`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release
`Os01g0651200`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release
`Os01g0651100`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023948 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009650 UV protection Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0071493 cellular response to UV-B Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0008970 glycerophospholipid phospholipase A1 activity Molecular Function

KEGG gene cross-reference

ath:AT2G42690

dosa:Os01g0651200

osa:9270605

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.300

Rank 1 · LXL04_023948 · OH-1004

Mitochondrion0.154

Rank 2 · LXL04_023948 · OH-1004

Nucleus0.144

Rank 3 · LXL04_023948 · OH-1004

Plastid0.132

Rank 4 · LXL04_023948 · OH-1004

Peroxisome0.128

Rank 5 · LXL04_023948 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01764.32Lipase_322-111 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023948	`PF01764.32`	Lipase_3	22	111	2.4e-08	34.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SJI7`	Arabidopsis thaliana	Phospholipase A1-IIdelta	39.024%	Swiss-Prot	moderate database homology
`B9EYD3`	Oryza sativa subsp. japonica	Phospholipase A1-II 4	46.218%	Swiss-Prot	moderate database homology
`A2WT96`	Oryza sativa subsp. indica	Phospholipase A1-II 2	43.697%	Swiss-Prot	moderate database homology
`Q0JKT4`	Oryza sativa subsp. japonica	Phospholipase A1-II 2	43.697%	Swiss-Prot	moderate database homology
`A2ZW16`	Oryza sativa subsp. japonica	Phospholipase A1-II 1	41.176%	Swiss-Prot	moderate database homology

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