LXL04_023920 | RubberDandelionOmics

Gene overview

LXL04_023920

Reference: OH-1004 Chr: Chr05 Coordinates: 74460948-74461665 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

462 bp · LXL04_023920|LXL04_023920|OH1004|cDNA

ATGAGCATGGCTCCAAACACACAAAACCGTCTTTACATGGAAGCCATACCTCTGGACATATCTGTTGTTTCTGCCATTAAAGATGGGCAGATTATACCACCAATTCACCATGAAGACTGCGAAAGCATTCTCTATTACGAGTCAGTTGCCTTCCGTGTCACGGATGGAGCTCTCCTGATTATTGATTCTATGGAGGGTGTTGGACTTCAAACACAAAGCCTCATTTCGCAAACATTTCGTGAAAGAGTTGTACCCGTATT...

CDS

Download CDS FASTA

462 bp · LXL04_023920|LXL04_023920|OH1004|CDS

ATGAGCATGGCTCCAAACACACAAAACCGTCTTTACATGGAAGCCATACCTCTGGACATATCTGTTGTTTCTGCCATTAAAGATGGGCAGATTATACCACCAATTCACCATGAAGACTGCGAAAGCATTCTCTATTACGAGTCAGTTGCCTTCCGTGTCACGGATGGAGCTCTCCTGATTATTGATTCTATGGAGGGTGTTGGACTTCAAACACAAAGCCTCATTTCGCAAACATTTCGTGAAAGAGTTGTACCCGTATT...

Protein

Download Protein FASTA

153 aa · LXL04_023920|LXL04_023920|OH1004|PROTEIN

MSMAPNTQNRLYMEAIPLDISVVSAIKDGQIIPPIHHEDCESILYYESVAFRVTDGALLIIDSMEGVGLQTQSLISQTFRERVVPVLIINKIDDCFFELQIDGEKAYKSFQRVIQKVNENIVSRQDPFLGDVKVHPERGDVAFSSGLYGWLLL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023920`
TK1151 ID	TkA01G466200
OH-1004 ID	LXL04_023920
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023920

Location Chr05:74460948-74461665 (+)

Description Similar to LOS1: Elongation factor 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q9ASR1`	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_023920 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006414 translational elongation Biological Process

GO:0009409 response to cold Biological Process

GO:0009631 cold acclimation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

KEGG gene cross-reference

ath:AT1G56070

bvg:104906141

kla:KLLA0_E02993g

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.522

Rank 1 · LXL04_023920 · OH-1004

Nucleus0.404

Rank 2 · LXL04_023920 · OH-1004

Mitochondrion0.087

Rank 3 · LXL04_023920 · OH-1004

Peroxisome0.054

Rank 4 · LXL04_023920 · OH-1004

Endoplasmic reticulum0.047

Rank 5 · LXL04_023920 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00009.34GTP_EFTU50-149 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023920	`PF00009.34`	GTP_EFTU	50	149	7.5e-12	45.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ASR1`	Arabidopsis thaliana	Elongation factor 2	44.138%	Swiss-Prot	moderate database homology

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