LXL04_023919 | RubberDandelionOmics

Gene overview

LXL04_023919

Reference: OH-1004 Chr: Chr05 Coordinates: 74370177-74372024 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1713 bp · LXL04_023919|LXL04_023919|OH1004|cDNA

ATGGATTCACTTATTGATGGAGTCGGTTCGTTGTCAACTAGCCATACCTCCGCCACAATATTAGGGTTCAACCCACCTGGAAAAACCCGCCCGCCACATCACCCCAATTCCGACACCACTTCAAACCGCTCTCATAAAACCTCCACCGACCATAAAGGAAAATCCGAAATTGTGGGACCCAACACAATCCTCGACCAAACCGCAAAAGAATACTTCCACAAACAAATTTCAGCACTAGAAGCCAAAGCCGGAATAATCAA...

CDS

Download CDS FASTA

1713 bp · LXL04_023919|LXL04_023919|OH1004|CDS

ATGGATTCACTTATTGATGGAGTCGGTTCGTTGTCAACTAGCCATACCTCCGCCACAATATTAGGGTTCAACCCACCTGGAAAAACCCGCCCGCCACATCACCCCAATTCCGACACCACTTCAAACCGCTCTCATAAAACCTCCACCGACCATAAAGGAAAATCCGAAATTGTGGGACCCAACACAATCCTCGACCAAACCGCAAAAGAATACTTCCACAAACAAATTTCAGCACTAGAAGCCAAAGCCGGAATAATCAA...

Protein

Download Protein FASTA

570 aa · LXL04_023919|LXL04_023919|OH1004|PROTEIN

MDSLIDGVGSLSTSHTSATILGFNPPGKTRPPHHPNSDTTSNRSHKTSTDHKGKSEIVGPNTILDQTAKEYFHKQISALEAKAGIIKHSDTDPDTMESSTTSCPSPQSSLYSLTNFTEAKQSFTNTEVTESVKSGEIGVPSVYRGSTGSDVSEESSSGSFTSAVYKPHKQNDSRWEAIRVVRAMNNDTGILEMKHFRHLKRLGCGDIGSVYLSELIGTRSYFAMKVMDKAALASRNKLLRAQTEREILQSLDHPFLPTLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023919`
TK1151 ID	TkA01G465910
OH-1004 ID	LXL04_023919
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_023919

Location Chr05:74370177-74372024 (-)

Description Similar to Protein kinase PVPK-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27580`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484
`At5g47750`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YBX5`	May play a role in the regulation of metabolism and signal transduction processes.	No verified direct reference in this release
`Os06g0291600`	May play a role in the regulation of metabolism and signal transduction processes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023919 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009555 pollen development Biological Process

GO:0009638 phototropism Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010540 basipetal auxin transport Biological Process

GO:0062075 pollen aperture formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G27580

ath:AT5G47750

dosa:Os06g0291600

osa:4340792

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.617

Rank 1 · LXL04_023919 · OH-1004

Nucleus0.338

Rank 2 · LXL04_023919 · OH-1004

Cell membrane0.137

Rank 3 · LXL04_023919 · OH-1004

Mitochondrion0.056

Rank 4 · LXL04_023919 · OH-1004

Golgi apparatus0.046

Rank 5 · LXL04_023919 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase197-346 aa

PF07714.24PK_Tyr_Ser-Thr199-346 aa

PF00069.32Pkinase426-529 aa

PF07714.24PK_Tyr_Ser-Thr433-514 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023919	`PF00069.32`	Pkinase	197	346	2.1e-58	198.5
LXL04_023919	`PF07714.24`	PK_Tyr_Ser-Thr	199	346	8.5e-28	98.1
LXL04_023919	`PF00069.32`	Pkinase	426	529	2.1e-58	198.5
LXL04_023919	`PF07714.24`	PK_Tyr_Ser-Thr	433	514	8.5e-28	98.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q05999`	Arabidopsis thaliana	Serine/threonine-protein kinase D6PKL3	69.433%	Swiss-Prot	strong database homology
`Q39183`	Arabidopsis thaliana	Serine/threonine-protein kinase D6PKL2	70.716%	Swiss-Prot	strong database homology
`A2YBX5`	Oryza sativa subsp. indica	Protein kinase G11A	60.070%	Swiss-Prot	strong database homology
`Q0DCT8`	Oryza sativa subsp. japonica	Protein kinase G11A	69.978%	Swiss-Prot	strong database homology

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