Gene Card
Gene overview
cDNA / CDS / Protein Sequences
987 bp · LXL04_023882|LXL04_023882|OH1004|cDNA
ATGGCGGTAGCCCTTTTTAGAAAAACCTTAAATCCACTAAACCCTAACATTAGAATTCTCCGAACCTTATCTACCCACGCCCATGCCGTAGTGGCCATAGACAACTCCGAAAAACCTCAAACCGACACCTCATCATCCTCGTTCACCTTTTCACCTGATCATACTGACACTGCAAACAAGGGAGATGAAATACACATTAAATCCAACAAATTGGCGGCTTCCACGTCAGTGACGATGCCGATGTCGTTCATGACCGGGTC...
987 bp · LXL04_023882|LXL04_023882|OH1004|CDS
ATGGCGGTAGCCCTTTTTAGAAAAACCTTAAATCCACTAAACCCTAACATTAGAATTCTCCGAACCTTATCTACCCACGCCCATGCCGTAGTGGCCATAGACAACTCCGAAAAACCTCAAACCGACACCTCATCATCCTCGTTCACCTTTTCACCTGATCATACTGACACTGCAAACAAGGGAGATGAAATACACATTAAATCCAACAAATTGGCGGCTTCCACGTCAGTGACGATGCCGATGTCGTTCATGACCGGGTC...
Protein
Download Protein FASTA328 aa · LXL04_023882|LXL04_023882|OH1004|PROTEIN
MAVALFRKTLNPLNPNIRILRTLSTHAHAVVAIDNSEKPQTDTSSSSFTFSPDHTDTANKGDEIHIKSNKLAASTSVTMPMSFMTGSIVGKRFYKQVTTRAFDDGIGWSVMLDYRTLKTPSKRPLKCPTLPLAKAIAAEWEYQLTDGIRPFTMPLMRLACTALERVPLTRPKIIHNLMTRFHQDLVFCRAPHDNDLTHPIHVLQVKKIDPLLKWVESEFGVKPVVYSSFFGGKQEEGLVKAVENVVKKTDDNELAAIDAL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023882 |
|---|---|
| TK1151 ID | TkA06G201970 |
| OH-1004 ID | LXL04_023882 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 89.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023882 |
|---|---|
| Location | Chr05:72290170-72293255 (-) |
| Description | Similar to ATPAF2: ATP synthase mitochondrial F1 complex assembly factor 2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly Biological Process GO:0043461 proton-transporting ATP synthase complex assembly Biological Process GO:0005739 mitochondrion Cellular Component GO:0005743 mitochondrial inner membrane Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0016607 nuclear speck Cellular Component GO:0044183 protein folding chaperone Molecular Function GO:0051082 unfolded protein binding Molecular Function |
| KEGG gene cross-reference | bta:513521 hsa:91647 mmu:246782 spo:2543406 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07542.17ATP1291-216 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023882 | PF07542.17 | ATP12 | 91 | 216 | 9.7e-29 | 100.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.