LXL04_023834 | RubberDandelionOmics

Gene overview

LXL04_023834

Reference: OH-1004 Chr: Chr05 Coordinates: 70305630-70307781 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1290 bp · LXL04_023834|LXL04_023834|OH1004|cDNA

ATGACCATCCAAATTCAAAGGAAAACAAATGAAAGAATAATACATTTGCAACCGTCAGTAGAAGAAAATAACCGAATTATGTCTCAAGAAAAGGAAAAGTTGACCAAAAGGCCAAAGCATCACAAATCGAGTAATGTGAAAAAAGTCAAATATCTTGACTTTTTACCTTCAAGTCATCAAAAACTCTCTTGCAGTTCATCTAATGAAGAACCCAAGGATACAGATTACAATACTTATATTCCCTCTCTTAGTTACGAATT...

CDS

Download CDS FASTA

1290 bp · LXL04_023834|LXL04_023834|OH1004|CDS

ATGACCATCCAAATTCAAAGGAAAACAAATGAAAGAATAATACATTTGCAACCGTCAGTAGAAGAAAATAACCGAATTATGTCTCAAGAAAAGGAAAAGTTGACCAAAAGGCCAAAGCATCACAAATCGAGTAATGTGAAAAAAGTCAAATATCTTGACTTTTTACCTTCAAGTCATCAAAAACTCTCTTGCAGTTCATCTAATGAAGAACCCAAGGATACAGATTACAATACTTATATTCCCTCTCTTAGTTACGAATT...

Protein

Download Protein FASTA

429 aa · LXL04_023834|LXL04_023834|OH1004|PROTEIN

MTIQIQRKTNERIIHLQPSVEENNRIMSQEKEKLTKRPKHHKSSNVKKVKYLDFLPSSHQKLSCSSSNEEPKDTDYNTYIPSLSYELESLILARFPRSEYWKLSMVNKRYHALVKSDELLRIRRDIGFYEPSVLMLSSGENNWWTFDQGLTTRRKLPVLPADICFSSGDKESLCAGTHLLVSGREIESLVIWRFESSTNKWYKGPSMINPRCLFASATCGNSAMVAGGVVEVATGTHISSDTAEIYDRNTRLWSSIPAMN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023834`
TK1151 ID	TkA06G210050
OH-1004 ID	LXL04_023834
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.500
Protein coverage (%)	TK1151 85.714 / OH-1004 30.769 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023834

Location Chr05:70305630-70307781 (+)

Description Similar to At3g27150: F-box/kelch-repeat protein At3g27150

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27150`	F-box/kelch-repeat protein At3g27150.	No verified direct reference in this release
`At1g26930`	F-box/kelch-repeat protein At1g26930.	No verified direct reference in this release
`At5g60570`	F-box/kelch-repeat protein At5g60570.	No verified direct reference in this release
`At2g02870`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g74510`	F-box/kelch-repeat protein At1g74510.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_023834 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G26930

ath:AT1G74510

ath:AT2G02870

ath:AT3G27150

ath:AT5G60570

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.534

Rank 1 · LXL04_023834 · OH-1004

Cytoplasm0.404

Rank 2 · LXL04_023834 · OH-1004

Cell membrane0.123

Rank 3 · LXL04_023834 · OH-1004

Endoplasmic reticulum0.050

Rank 4 · LXL04_023834 · OH-1004

Plastid0.029

Rank 5 · LXL04_023834 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25210.2Kelch_FKB95191-379 aa

PF24681.2Kelch_KLHDC2_KLHL20_DRC7191-329 aa

PF13964.13Beta-prop_Calicin198-305 aa

PF01344.32Kelch_1210-260 aa

PF24681.2Kelch_KLHDC2_KLHL20_DRC7216-382 aa

PF01344.32Kelch_1263-306 aa

PF07646.22Kelch_2269-306 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023834	`PF25210.2`	Kelch_FKB95	191	379	2.2e-13	51.2
LXL04_023834	`PF24681.2`	Kelch_KLHDC2_KLHL20_DRC7	191	329	3.6e-12	46.8
LXL04_023834	`PF13964.13`	Beta-prop_Calicin	198	305	8.4e-09	35.6
LXL04_023834	`PF01344.32`	Kelch_1	210	260	3.8e-21	75.0
LXL04_023834	`PF24681.2`	Kelch_KLHDC2_KLHL20_DRC7	216	382	3.6e-12	46.8
LXL04_023834	`PF01344.32`	Kelch_1	263	306	3.8e-21	75.0
LXL04_023834	`PF07646.22`	Kelch_2	269	306	4e-14	52.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LI89`	Arabidopsis thaliana	F-box/kelch-repeat protein At3g27150	54.054%	Swiss-Prot	strong database homology
`Q84M94`	Arabidopsis thaliana	F-box/kelch-repeat protein At1g26930	37.105%	Swiss-Prot	moderate database homology
`Q9FKJ0`	Arabidopsis thaliana	F-box/kelch-repeat protein At5g60570	37.960%	Swiss-Prot	moderate database homology
`Q8L736`	Arabidopsis thaliana	F-box/kelch-repeat protein SKIP11	36.292%	Swiss-Prot	moderate database homology
`Q9CA63`	Arabidopsis thaliana	F-box/kelch-repeat protein At1g74510	35.977%	Swiss-Prot	moderate database homology

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