Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1170 bp · LXL04_023816|LXL04_023816|OH1004|cDNA
ATGTTGTTTGCTTTCTGGAAACATTTGGGATCATCTACTCATGAAGAGGAGGTTGGCAGACTAAGTCATTCTTTGTATGAATATGATGATGCGCCCAATGAATCCACCTTCACCTGCACGTGCACCGTGGGTCCCACCATTACCCCCAATGACAAGTGGCTTTTGGAACGCTACAAATGTTCAAAGGAGAAGGAACTGGAGATGCTTATGGCTATGAAAGATGGCAAGAATCACATAGAAGAAACAGAGGAAAAGCCAAA...
1170 bp · LXL04_023816|LXL04_023816|OH1004|CDS
ATGTTGTTTGCTTTCTGGAAACATTTGGGATCATCTACTCATGAAGAGGAGGTTGGCAGACTAAGTCATTCTTTGTATGAATATGATGATGCGCCCAATGAATCCACCTTCACCTGCACGTGCACCGTGGGTCCCACCATTACCCCCAATGACAAGTGGCTTTTGGAACGCTACAAATGTTCAAAGGAGAAGGAACTGGAGATGCTTATGGCTATGAAAGATGGCAAGAATCACATAGAAGAAACAGAGGAAAAGCCAAA...
Protein
Download Protein FASTA389 aa · LXL04_023816|LXL04_023816|OH1004|PROTEIN
MLFAFWKHLGSSTHEEEVGRLSHSLYEYDDAPNESTFTCTCTVGPTITPNDKWLLERYKCSKEKELEMLMAMKDGKNHIEETEEKPNETSMEKFSNFIKNNKNSIETQEKISLEAANSLLAILKNDLQPFKVITDDKTPWEEKSAAVKLANKLKKDKRNKLWRKRKRQHIGEMLSKEREQFDQADREADEWRAREIANEVAKQRVEKMKEIAKQKAKEERKRLESELELVLIVEKLQELRSIRIQKLTKQEDNKFLERIR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023816 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023816 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr05:69654447-69656515 (-) | ||||||
| Description | Similar to SNRNP59: U11/U12 small nuclear ribonucleoprotein 59 kDa protein | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006397 mRNA processing Biological Process GO:0008380 RNA splicing Biological Process GO:0005689 U12-type spliceosomal complex Cellular Component GO:0005737 cytoplasm Cellular Component | ||||||
| KEGG gene cross-reference | ath:AT2G46200 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF16021.11PDCD7142-384 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023816 | PF16021.11 | PDCD7 | 142 | 384 | 1.4e-19 | 71.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q8VYD3 | Arabidopsis thaliana | U11/U12 small nuclear ribonucleoprotein 59 kDa protein | 49.405% | Swiss-Prot | moderate database homology |