LXL04_023738 | RubberDandelionOmics

Gene overview

LXL04_023738

Reference: OH-1004 Chr: Chr05 Coordinates: 66238886-66239700 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

588 bp · LXL04_023738|LXL04_023738|OH1004|cDNA

ATGCTGCTAACTCACATTGTGGATTTAGTAGGCGGATACTACGATGCCGGAGACAACGTCAAGTTTGGGTTTCCGATGGCCTTCACCGCCACAATGCTGTCGTGGAGTGTGCTTGAATTTGGGGGGATGATGAAAGGGGAGTTGAGAAACGCAAAAGAAGCTATCCGTTGGGCTACTGATTATCTACTCAAAGCCACCGCAGAACCCGATGTCATTTACGTTCAGGTGGGTGATGCAACCAAGGATCATGCGTGTTGGGA...

CDS

Download CDS FASTA

588 bp · LXL04_023738|LXL04_023738|OH1004|CDS

ATGCTGCTAACTCACATTGTGGATTTAGTAGGCGGATACTACGATGCCGGAGACAACGTCAAGTTTGGGTTTCCGATGGCCTTCACCGCCACAATGCTGTCGTGGAGTGTGCTTGAATTTGGGGGGATGATGAAAGGGGAGTTGAGAAACGCAAAAGAAGCTATCCGTTGGGCTACTGATTATCTACTCAAAGCCACCGCAGAACCCGATGTCATTTACGTTCAGGTGGGTGATGCAACCAAGGATCATGCGTGTTGGGA...

Protein

Download Protein FASTA

195 aa · LXL04_023738|LXL04_023738|OH1004|PROTEIN

MLLTHIVDLVGGYYDAGDNVKFGFPMAFTATMLSWSVLEFGGMMKGELRNAKEAIRWATDYLLKATAEPDVIYVQVGDATKDHACWERPEDMDTPRTVIKIDRNTPGTEVAAETAAALASASLVFRKSDRTYSKLLLKRAISVFEFADKYRGSYSSGLKKFVCPYYCSYSGFQVTKNYLNTNINREVILTFGQLA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023738`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_023738

Location Chr05:66238886-66239700 (+)

Description Similar to At4g02290: Endoglucanase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02290`	Endoglucanase 17.	No verified direct reference in this release
`At1g02800`	Endoglucanase 1.	No verified direct reference in this release
`At1g70710`	Required for cellulose formation of the cell wall.	Abnormal 'wrinkled' cell walls and retarded development of transgenic Arabidopsis thaliana plants expressing endo-1,4-beta-glucanase (cell) antisense.2003 · DOI: 10.1023/a:1021162321527

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0312800`	Endoglucanase 3.	No verified direct reference in this release
`Os06g0256900`	Endoglucanase 17.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023738 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007389 pattern specification process Biological Process

GO:0009624 response to nematode Biological Process

GO:0030245 cellulose catabolic process Biological Process

GO:0042547 cell wall modification involved in multidimensional cell growth Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008810 cellulase activity Molecular Function

KEGG gene cross-reference

ath:AT1G02800

ath:AT1G70710

ath:AT4G02290

dosa:Os01g0312800

dosa:Os06g0256900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.477

Rank 1 · LXL04_023738 · OH-1004

Lysosome / Vacuole0.195

Rank 2 · LXL04_023738 · OH-1004

Cell membrane0.145

Rank 3 · LXL04_023738 · OH-1004

Cytoplasm0.126

Rank 4 · LXL04_023738 · OH-1004

Endoplasmic reticulum0.101

Rank 5 · LXL04_023738 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00759.26Glyco_hydro_97-172 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023738	`PF00759.26`	Glyco_hydro_9	7	172	3.6e-68	231.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81416`	Arabidopsis thaliana	Endoglucanase 17	80.240%	Swiss-Prot	strong database homology
`Q9SRX3`	Arabidopsis thaliana	Endoglucanase 1	74.850%	Swiss-Prot	strong database homology
`Q9CAC1`	Arabidopsis thaliana	Endoglucanase 8	68.862%	Swiss-Prot	strong database homology
`Q8LQ92`	Oryza sativa subsp. japonica	Endoglucanase 3	74.850%	Swiss-Prot	strong database homology
`Q652F9`	Oryza sativa subsp. japonica	Endoglucanase 17	68.862%	Swiss-Prot	strong database homology

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