Gene Card
Gene overview
cDNA / CDS / Protein Sequences
810 bp · LXL04_023734|LXL04_023734|OH1004|cDNA
ATGACAAATATGAAAGCTGGAAAGTTCTTGCTGTTATTTCTCTGCTTCTTTGTGATCTCTAATACAGTGATCTGCGACCCACATACTTGCCCCGCTAATCTTGATGGCGATTGTGGTTTGGAAAGTTCGTCAGAATGGGAAGGGGAATTTGTCCCTGGTATTCCCAAAATTAAGCACGAGGGACCCACAAGCAAGAATCCACTTGCATTCAAATGGTACAATGCCAATGAAGAAATTCTCGGCAAGAATATGAAGTTTTT...
810 bp · LXL04_023734|LXL04_023734|OH1004|CDS
ATGACAAATATGAAAGCTGGAAAGTTCTTGCTGTTATTTCTCTGCTTCTTTGTGATCTCTAATACAGTGATCTGCGACCCACATACTTGCCCCGCTAATCTTGATGGCGATTGTGGTTTGGAAAGTTCGTCAGAATGGGAAGGGGAATTTGTCCCTGGTATTCCCAAAATTAAGCACGAGGGACCCACAAGCAAGAATCCACTTGCATTCAAATGGTACAATGCCAATGAAGAAATTCTCGGCAAGAATATGAAGTTTTT...
Protein
Download Protein FASTA269 aa · LXL04_023734|LXL04_023734|OH1004|PROTEIN
MTNMKAGKFLLLFLCFFVISNTVICDPHTCPANLDGDCGLESSSEWEGEFVPGIPKIKHEGPTSKNPLAFKWYNANEEILGKNMKFLVKRVLLFVNRIGCDLVLLFGTHFVEQEVILLVQLLQMWPWEDGTNSLNMAKRRMRANFEFLEKLGVDRWCFHDRDIVPDGRTLEESNANLDEIVALAKELQGTKIRPLWGTAQLFLHPRYMHGGATSSEIGVYAYAAAQVKKAIEVTHYLGGENYVFWGGREGYQTLLNTDME...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023734 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023734 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr05:65889794-65891343 (+) | ||||||
| Description | Similar to XYLA: Xylose isomerase | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0042732 D-xylose metabolic process Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0009536 plastid Cellular Component GO:0099503 secretory vesicle Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0009045 xylose isomerase activity Molecular Function GO:0046872 metal ion binding Molecular Function | ||||||
| KEGG gene cross-reference | ate:Athe_0603 ath:AT5G57655 tex:Teth514_0153 tpd:Teth39_2060 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9FKK7 | Arabidopsis thaliana | Xylose isomerase | 67.045% | Swiss-Prot | strong database homology |