LXL04_023610 | RubberDandelionOmics

Gene overview

LXL04_023610

Reference: OH-1004 Chr: Chr05 Coordinates: 55642384-55642910 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

441 bp · LXL04_023610|LXL04_023610|OH1004|cDNA

ATGAGCACGAGACTTCAGATTAGCTTTCCTCTTCTGCAACTGCAGATTGTCTGGCTAGGAAGAGTGCCTCTCTTAAATCTAGGAAAGCGAGGAGGGGCAAAAACACCAGTGAACGCTATTGCTAACCAATCTGATTATGGAATTGGAGGCAACGAAGGAGAGTGTAAAGAAGGTCGAGAGATTAAAGTGAAGAATAGGCTCAGAAAGCTTTACACCAACAATGGACCGCAATGGAGTCATGTGGTTTTCGAACACCCAGC...

CDS

Download CDS FASTA

441 bp · LXL04_023610|LXL04_023610|OH1004|CDS

ATGAGCACGAGACTTCAGATTAGCTTTCCTCTTCTGCAACTGCAGATTGTCTGGCTAGGAAGAGTGCCTCTCTTAAATCTAGGAAAGCGAGGAGGGGCAAAAACACCAGTGAACGCTATTGCTAACCAATCTGATTATGGAATTGGAGGCAACGAAGGAGAGTGTAAAGAAGGTCGAGAGATTAAAGTGAAGAATAGGCTCAGAAAGCTTTACACCAACAATGGACCGCAATGGAGTCATGTGGTTTTCGAACACCCAGC...

Protein

Download Protein FASTA

146 aa · LXL04_023610|LXL04_023610|OH1004|PROTEIN

MSTRLQISFPLLQLQIVWLGRVPLLNLGKRGGAKTPVNAIANQSDYGIGGNEGECKEGREIKVKNRLRKLYTNNGPQWSHVVFEHPASLQTLAMDPVKKKEIVDDLPTFSNAENRIGRAWKRGYLLYGPPGTGKSTRSPPSIIVID

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023610`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023610

Location Chr05:55642384-55642910 (+)

Description Similar to AATP1: AAA-ATPase ASD, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40010`	Required to regulate morphology and anatomy during seed maturation.	No verified direct reference in this release
`At5g40000`	AAA-ATPase At5g40000.	No verified direct reference in this release
`At3g28580`	AAA-ATPase At3g28580.	No verified direct reference in this release
`At3g28610`	AAA-ATPase At3g28610.	No verified direct reference in this release
`At3g28600`	AAA-ATPase At3g28600.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023610 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000304 response to singlet oxygen Biological Process

GO:0006950 response to stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010154 fruit development Biological Process

GO:0010431 seed maturation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G28580

ath:AT3G28600

ath:AT3G28610

ath:AT5G40000

ath:AT5G40010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.408

Rank 1 · LXL04_023610 · OH-1004

Nucleus0.374

Rank 2 · LXL04_023610 · OH-1004

Mitochondrion0.125

Rank 3 · LXL04_023610 · OH-1004

Cell membrane0.093

Rank 4 · LXL04_023610 · OH-1004

Endoplasmic reticulum0.087

Rank 5 · LXL04_023610 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FLD5`	Arabidopsis thaliana	AAA-ATPase ASD, mitochondrial	59.783%	Swiss-Prot	moderate database homology
`F4KFX5`	Arabidopsis thaliana	AAA-ATPase At5g40000	58.696%	Swiss-Prot	moderate database homology
`Q9LJJ7`	Arabidopsis thaliana	AAA-ATPase At3g28580	57.143%	Swiss-Prot	moderate database homology
`Q9LJJ5`	Arabidopsis thaliana	AAA-ATPase At3g28610	52.688%	Swiss-Prot	moderate database homology
`F4J0C0`	Arabidopsis thaliana	AAA-ATPase At3g28600	52.688%	Swiss-Prot	moderate database homology

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