LXL04_023608 | RubberDandelionOmics

Gene overview

LXL04_023608

Reference: OH-1004 Chr: Chr05 Coordinates: 55010115-55011823 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

816 bp · LXL04_023608|LXL04_023608|OH1004|cDNA

ATGACAGTTGACTCCTCGTCGCAATTATCGGCTACTCGTTTAGTCATTCCGAAAGCTGCTAGTCAGAGTCAAAATCCGAGGAAGAGAACTCCCAAGGAACATACTCACAAGTCGTCACCTGAGAAAGAAGGTAATTCTCAAACAAATTCAAGATCAAGAGATGAAAGAAAATATCTAGATGCTGATGATCGCAGTGGTATTAAAAGAACAGAACAACCTCAATCAACAGCTTTCAAGTCGTTTGGCACACAGAGAAAAAG...

CDS

Download CDS FASTA

816 bp · LXL04_023608|LXL04_023608|OH1004|CDS

ATGACAGTTGACTCCTCGTCGCAATTATCGGCTACTCGTTTAGTCATTCCGAAAGCTGCTAGTCAGAGTCAAAATCCGAGGAAGAGAACTCCCAAGGAACATACTCACAAGTCGTCACCTGAGAAAGAAGGTAATTCTCAAACAAATTCAAGATCAAGAGATGAAAGAAAATATCTAGATGCTGATGATCGCAGTGGTATTAAAAGAACAGAACAACCTCAATCAACAGCTTTCAAGTCGTTTGGCACACAGAGAAAAAG...

Protein

Download Protein FASTA

271 aa · LXL04_023608|LXL04_023608|OH1004|PROTEIN

MTVDSSSQLSATRLVIPKAASQSQNPRKRTPKEHTHKSSPEKEGNSQTNSRSRDERKYLDADDRSGIKRTEQPQSTAFKSFGTQRKSAKGFMGNLTEQQLETAKIQDASFLNVVVKVYCTHTAPDYSLPWQKQRHVLIPIQLYLPRVQLLLQVAFGYEKCHHFSLNPHAFMIGDGKLLTNAHYVEHNTQVSSFLTVYSCIMSIQVQLSCSISLYIYIYWLHVKVKRRGDDTKYVAKVLAKGMECDIALLSVENEKLWKGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023608`
TK1151 ID	TkA01G621510
OH-1004 ID	LXL04_023608
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 46.125 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023608

Location Chr05:55010115-55011823 (+)

Description Similar to DEGP2: Protease Do-like 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47940`	Serine protease that performs the primary cleavage of the photodamaged D1 protein in plant photosystem II.	A chloroplast DegP2 protease performs the primary cleavage of the photodamaged D1 protein in plant photosystem II.2001 · DOI: 10.1093/emboj/20.4.713
`At5g40200`	Serine protease that degrades the two-component response regulator ARR4.	No verified direct reference in this release
`At1g65630`	Putative serine protease.	No verified direct reference in this release
`At3g16550`	Putative serine protease.	No verified direct reference in this release
`At1g65640`	Putative serine protease.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_023608 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0010206 photosystem II repair Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009533 chloroplast stromal thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT1G65630

ath:AT1G65640

ath:AT2G47940

ath:AT3G16550

ath:AT5G40200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.443

Rank 1 · LXL04_023608 · OH-1004

Nucleus0.370

Rank 2 · LXL04_023608 · OH-1004

Mitochondrion0.174

Rank 3 · LXL04_023608 · OH-1004

Endoplasmic reticulum0.101

Rank 4 · LXL04_023608 · OH-1004

Cell membrane0.097

Rank 5 · LXL04_023608 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O82261`	Arabidopsis thaliana	Protease Do-like 2, chloroplastic	43.609%	Swiss-Prot	moderate database homology
`Q9FL12`	Arabidopsis thaliana	Protease Do-like 9	30.317%	Swiss-Prot	moderate database homology
`Q9SHZ1`	Arabidopsis thaliana	Putative protease Do-like 3, mitochondrial	28.000%	Swiss-Prot	weak database homology
`Q9LK70`	Arabidopsis thaliana	Putative protease Do-like 12, mitochondrial	33.010%	Swiss-Prot	weak database homology
`Q9SHZ0`	Arabidopsis thaliana	Protease Do-like 4, mitochondrial	25.466%	Swiss-Prot	weak database homology

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