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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_023542
Reference: OH-1004 Chr: Chr05 Coordinates: 49232619-49237579 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3456 bp · LXL04_023542|LXL04_023542|OH1004|cDNA

ATGGAAGTATATGACAGGAGTGATCGGGAAATGTCTTTGTTACAAGAGGATCGATTATGCTCAAATGTTTTTAATCAAATCACTGAGTTCGTCTGTGCTAAGAAAAGGCCATCTGATGTTTCGTTCCCATGGTGATTGTCCCTAATTCTTCAATACCATTCCCGAGGGTACAAAATTAATTGTGGGCGTGAGATGGAATTTCCCAAGATGTCAACCAAAAACATCAAAGTAGCCATTCATAAGGATGATGTCCCTATGAC...

CDS

Download CDS FASTA

3321 bp · LXL04_023542|LXL04_023542|OH1004|CDS

TTGTCCCTAATTCTTCAATACCATTCCCGAGGGTACAAAATTAATTGTGGGCGTGAGATGGAATTTCCCAAGATGTCAACCAAAAACATCAAAGTAGCCATTCATAAGGATGATGTCCCTATGACACCTCGTATGATTTCCTGGATCAATCAACCTTACACAGTTGATTATCCTCAATTGCCTCAAGATGATTTAGAGGATGCTGATGAAGGTATTGGGAATGAGGGGAACGATGACGATGATGTTGATAATGATGACAA...

Protein

Download Protein FASTA

1106 aa · LXL04_023542|LXL04_023542|OH1004|PROTEIN

MSLILQYHSRGYKINCGREMEFPKMSTKNIKVAIHKDDVPMTPRMISWINQPYTVDYPQLPQDDLEDADEGIGNEGNDDDDVDNDDNDNNDDDDDVDDDTNQNNDNENDDDEDDDDVDADANQNNINENDDDDDDDDDDSENDDDAIKNTDVVQMDNAGSHDDEYDRGFESLSYPNNIPWVSTHIYFNSSSSENNESDKLESPHVNEIDNQKSPSYIASPVSNSRPSSPHAESPTHFTPPHVLTGHDERKQSKVDSDFQD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_023542
TK1151 IDTkA06G254630
OH-1004 IDLXL04_023542
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.900
Protein coverage (%)TK1151 94.474 / OH-1004 80.380
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_023542
LocationChr05:49232619-49237579 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023542 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0007156 homophilic cell-cell adhesion Biological Process
GO:0019079 viral genome replication Biological Process
GO:0019082 viral protein processing Biological Process
GO:0032259 methylation Biological Process
GO:0039502 symbiont-mediated suppression of host type I interferon-mediated signaling pathway Biological Process
GO:0039520 symbiont-mediated activation of host autophagy Biological Process
GO:0039548 symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity Biological Process
GO:0039579 symbiont-mediated suppression of host ISG15-protein conjugation Biological Process
GO:0039595 symbiont-mediated degradation of host mRNA Biological Process
GO:0039648 symbiont-mediated perturbation of host ubiquitin-like protein modification Biological Process
GO:0039657 symbiont-mediated suppression of host gene expression Biological Process
KEGG gene cross-reference
hwa:HQ_1081A
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.615
Rank 1 · LXL04_023542 · OH-1004
Cytoplasm0.339
Rank 2 · LXL04_023542 · OH-1004
Cell membrane0.062
Rank 3 · LXL04_023542 · OH-1004
Mitochondrion0.054
Rank 4 · LXL04_023542 · OH-1004
Extracellular0.030
Rank 5 · LXL04_023542 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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