Gene Card
Gene overview
cDNA / CDS / Protein Sequences
876 bp · LXL04_023480|LXL04_023480|OH1004|cDNA
ATGTCTGGCCAATCCGACACTCGAGCGGAGTATGACACGATCAGAATTGTTACCAACCTAAGAATGGAGCGCCTCAGTATGATTTCGGGCAATTTTGGTCCCTTTCGGCCACAATCAGCTATGCAAGTTCCAATATGTATAGCTATCGCTTTGAACAGGAGAGAGAAGTGCACGATTCGACCTCCAGATTGGATATCTTTTGGTAAGTTTTCACTCTATGAAAGTCGATACAGTATTACAGAGGAAGGTTGTGTGGTATC...
876 bp · LXL04_023480|LXL04_023480|OH1004|CDS
ATGTCTGGCCAATCCGACACTCGAGCGGAGTATGACACGATCAGAATTGTTACCAACCTAAGAATGGAGCGCCTCAGTATGATTTCGGGCAATTTTGGTCCCTTTCGGCCACAATCAGCTATGCAAGTTCCAATATGTATAGCTATCGCTTTGAACAGGAGAGAGAAGTGCACGATTCGACCTCCAGATTGGATATCTTTTGGTAAGTTTTCACTCTATGAAAGTCGATACAGTATTACAGAGGAAGGTTGTGTGGTATC...
Protein
Download Protein FASTA291 aa · LXL04_023480|LXL04_023480|OH1004|PROTEIN
MSGQSDTRAEYDTIRIVTNLRMERLSMISGNFGPFRPQSAMQVPICIAIALNRREKCTIRPPDWISFGKFSLYESRYSITEEGCVVSSYQFVQHRRGYVFDNLLSECQGASDAIDKLRFSCVIDPHYLVILIPLINIDPLFLGLGYRCYLNAWEIKKEVMIEFIDVAKNGEIIFIEILKVGERIDVQMIPNSVVINTGGQIEVLSKGSYKIVWHPVNAKPDRVRRSIVLVLFYNTIIEPAMELVKKENKEVNQFGYLKFW...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023480 |
|---|---|
| TK1151 ID | TkA06G302140 |
| OH-1004 ID | LXL04_023480 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023480 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:44202606-44204945 (-) | |||||||||
| Description | Similar to At1g77330: 1-aminocyclopropane-1-carboxylate oxidase 5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000727 double-strand break repair via break-induced replication Biological Process GO:0002238 response to molecule of fungal origin Biological Process GO:0006260 DNA replication Biological Process GO:0006952 defense response Biological Process GO:0009693 ethylene biosynthetic process Biological Process GO:0009805 coumarin biosynthetic process Biological Process GO:0009835 fruit ripening Biological Process GO:0071398 cellular response to fatty acid Biological Process GO:0000811 GINS complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G77330 ath:AT3G12530 ddi:DDB_G0293564 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25005.2PSF2_N9-59 aaPF03171.272OG-FeII_Oxy176-229 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023480 | PF25005.2 | PSF2_N | 9 | 59 | 3.8e-15 | 56.4 |
| LXL04_023480 | PF03171.27 | 2OG-FeII_Oxy | 176 | 229 | 1.5e-06 | 29.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.