LXL04_023398 | RubberDandelionOmics

Gene overview

LXL04_023398

Reference: OH-1004 Chr: Chr05 Coordinates: 37613594-37615837 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1695 bp · LXL04_023398|LXL04_023398|OH1004|cDNA

ATGGATCTAAGATTTCATCACTCTGGATCTACGCCATCTGAGGAATCAGCTTTGGATTTGGAAAGAATCTGCCGCGACCATCTCACAAGTCCACCTGTACAGTCGTTTACTACCACCACCACATCCGGTGGTCAACTCTCAGAAACCAACGCTGCTGCAGCGTACTTCTCATGGCCGACATCTAGCAGATTAAACGATGCTGCTGAAGACAGAGCCAATTACTTCGGAAATCTTTTGAAGGGGGTTTTACCAGAAACCCT...

CDS

Download CDS FASTA

1695 bp · LXL04_023398|LXL04_023398|OH1004|CDS

ATGGATCTAAGATTTCATCACTCTGGATCTACGCCATCTGAGGAATCAGCTTTGGATTTGGAAAGAATCTGCCGCGACCATCTCACAAGTCCACCTGTACAGTCGTTTACTACCACCACCACATCCGGTGGTCAACTCTCAGAAACCAACGCTGCTGCAGCGTACTTCTCATGGCCGACATCTAGCAGATTAAACGATGCTGCTGAAGACAGAGCCAATTACTTCGGAAATCTTTTGAAGGGGGTTTTACCAGAAACCCT...

Protein

Download Protein FASTA

564 aa · LXL04_023398|LXL04_023398|OH1004|PROTEIN

MDLRFHHSGSTPSEESALDLERICRDHLTSPPVQSFTTTTTSGGQLSETNAAAAYFSWPTSSRLNDAAEDRANYFGNLLKGVLPETLGRLPTGQRATTLLELMTIRAFHSKILRRCSLGTAIGFRIRRGLLTDIPAILVFVARKVHRQWLSHIQCLPSALEGPGGVWCDVDVVEFSYYGAPAATPKEQLYSELVDGLRGSDPCIGSGSQVASQETYGTLGAIVKSRTGNQQVGFLTNRHVAVDLDYPNQKMFHPMPPSLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023398`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023398

Location Chr05:37613594-37615837 (-)

Description Similar to NAL1: Protein NARROW LEAF 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0615000`	Involved in the regulation of lateral leaf growth.	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport.2008 · DOI: 10.1104/pp.108.118778 Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1.2012 · DOI: 10.1007/s00299-011-1207-7 A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate.2013 · DOI: 10.1038/srep02149 NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars.2013 · DOI: 10.1073/pnas.1310790110 LSCHL4 from Japonica Cultivar, which is allelic to NAL1, increases yield of indica super rice 93-11.2014 · DOI: 10.1093/mp/ssu055

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023398 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010222 stem vascular tissue pattern formation Biological Process

GO:0010305 leaf vascular tissue pattern formation Biological Process

GO:0080006 internode patterning Biological Process

GO:2000024 regulation of leaf development Biological Process

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

dosa:Os04g0615000

osa:4336986

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.543

Rank 1 · LXL04_023398 · OH-1004

Nucleus0.388

Rank 2 · LXL04_023398 · OH-1004

Cell membrane0.108

Rank 3 · LXL04_023398 · OH-1004

Mitochondrion0.098

Rank 4 · LXL04_023398 · OH-1004

Endoplasmic reticulum0.077

Rank 5 · LXL04_023398 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25608.1NAL1_N94-173 aa

PF25819.2Nal1_C186-449 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023398	`PF25608.1`	NAL1_N	94	173	5.1e-44	148.6
LXL04_023398	`PF25819.2`	Nal1_C	186	449	2.3e-158	526.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B4XT64`	Oryza sativa subsp. japonica	Protein NARROW LEAF 1	66.610%	Swiss-Prot	strong database homology

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