Gene Card
Gene overview
cDNA / CDS / Protein Sequences
5031 bp · LXL04_023384|LXL04_023384|OH1004|cDNA
ATGGAAGACGTGGATTCTAAATTGGAAAATGACAACTTGTCACCAGATGACATCATCAATGGAAGTTCCATTTtgaagcgaaaaaggaaaaaGATTCCATTGGGGGATGGCAACACAACTGATTCTTTAGCATCAGAATCACAAACAAGTACTTCATCCAAAGGGAAGTTAAAACAAGAAACCTCTTCTGATCAAACACCTGTAAAGGAAAAAGGAACCGATGGGTACTATTACGAATGTGTCGTATGTGATCTTGGTGG...
5031 bp · LXL04_023384|LXL04_023384|OH1004|CDS
ATGGAAGACGTGGATTCTAAATTGGAAAATGACAACTTGTCACCAGATGACATCATCAATGGAAGTTCCATTTTGAAGCGAAAAAGGAAAAAGATTCCATTGGGGGATGGCAACACAACTGATTCTTTAGCATCAGAATCACAAACAAGTACTTCATCCAAAGGGAAGTTAAAACAAGAAACCTCTTCTGATCAAACACCTGTAAAGGAAAAAGGAACCGATGGGTACTATTACGAATGTGTCGTATGTGATCTTGGTGG...
Protein
Download Protein FASTA1676 aa · LXL04_023384|LXL04_023384|OH1004|PROTEIN
MEDVDSKLENDNLSPDDIINGSSILKRKRKKIPLGDGNTTDSLASESQTSTSSKGKLKQETSSDQTPVKEKGTDGYYYECVVCDLGGDLLCCDSCPRTYHIECLDPPLEQIPIGKWKCPTCCKKDDSPESIEDLNPTSKRAKTKDASKKSKSRIKSAKKTEKKVESCEINEEKHSHKKEVVLAIESVTKSLKRKWKVPSDDVKKKPRKEHVTSSSSQVKVKQKSIKHPKAKSLSKNMGSENLDIKFKDEVERVLGCRIQA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023384 |
|---|---|
| TK1151 ID | TkA06G346950 |
| OH-1004 ID | LXL04_023384 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 95.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023384 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:36975963-36982107 (+) | |||||||||
| Description | Similar to CHR4: Protein CHROMATIN REMODELING 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0006366 transcription by RNA polymerase II Biological Process GO:0008285 negative regulation of cell population proliferation Biological Process GO:0009414 response to water deprivation Biological Process GO:0009733 response to auxin Biological Process GO:0009736 cytokinin-activated signaling pathway Biological Process GO:0009739 response to gibberellin Biological Process GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process GO:0009992 intracellular water homeostasis Biological Process GO:0035092 sperm DNA condensation Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G25170 ath:AT5G44800 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00628.36PHD80-121 aaPF00385.31Chromo337-383 aaPF00385.31Chromo410-446 aaPF04851.22ResIII483-648 aaPF00270.36DEAD485-649 aaPF00176.30SNF2-rel_dom486-772 aaPF11496.15HDA2-3717-940 aaPF00271.38Helicase_C798-912 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023384 | PF00628.36 | PHD | 80 | 121 | 2.4e-09 | 37.8 |
| LXL04_023384 | PF00385.31 | Chromo | 337 | 383 | 1.4e-15 | 57.6 |
| LXL04_023384 | PF00385.31 | Chromo | 410 | 446 | 1.4e-15 | 57.6 |
| LXL04_023384 | PF04851.22 | ResIII | 483 | 648 | 3.3e-10 | 40.9 |
| LXL04_023384 | PF00270.36 | DEAD | 485 | 649 | 6.8e-06 | 26.6 |
| LXL04_023384 | PF00176.30 | SNF2-rel_dom | 486 | 772 | 6.5e-79 | 265.7 |
| LXL04_023384 | PF11496.15 | HDA2-3 | 717 | 940 | 2.2e-11 | 44.2 |
| LXL04_023384 | PF00271.38 | Helicase_C | 798 | 912 | 3e-23 | 82.9 |
| LXL04_023384 | PF06465.19 | DUF1087 | 1077 | 1122 | 3.9e-07 | 30.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.