LXL04_023182 | RubberDandelionOmics

Gene overview

LXL04_023182

Reference: OH-1004 Chr: Chr05 Coordinates: 25935259-25937934 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

963 bp · LXL04_023182|LXL04_023182|OH1004|cDNA

ATGATCGTATCGGAACACATTCCAAGACATCGGACTTTAATGGCGACCATCTCCTCAATTGAAAACAGCAAGCTCACCCGTATTCTTCAACCTGCACTTGGTAATGCAAAAATTTCCATCATTTGTACTGTGGCACCAAAAGAGGTTCATGTAGAAGAAACAAAGGGTACCCTTCAGTTTATCCGTAGAGCTAAACGTATCACCAACTATGTTCAAGTAAACGAGGGATCTCATGCGGGGGGTGCTGGAGCAAGAAATCT...

CDS

Download CDS FASTA

963 bp · LXL04_023182|LXL04_023182|OH1004|CDS

ATGATCGTATCGGAACACATTCCAAGACATCGGACTTTAATGGCGACCATCTCCTCAATTGAAAACAGCAAGCTCACCCGTATTCTTCAACCTGCACTTGGTAATGCAAAAATTTCCATCATTTGTACTGTGGCACCAAAAGAGGTTCATGTAGAAGAAACAAAGGGTACCCTTCAGTTTATCCGTAGAGCTAAACGTATCACCAACTATGTTCAAGTAAACGAGGGATCTCATGCGGGGGGTGCTGGAGCAAGAAATCT...

Protein

Download Protein FASTA

320 aa · LXL04_023182|LXL04_023182|OH1004|PROTEIN

MIVSEHIPRHRTLMATISSIENSKLTRILQPALGNAKISIICTVAPKEVHVEETKGTLQFIRRAKRITNYVQVNEGSHAGGAGARNLELRNDMLKHGLEHEKLDMELEEERKSHIEQEQCSREHQMKNGSSDSEGISTRETMSKKIQVIVSIPQLLNQLQILLLLKDLINLGHLCIPGHFKMNLDCSIDNHKEVENLRMQLQQAIDERNEFESFEEDDDKSPTSKLISTTNEVVKSIMSTLEAEVSVAINGYRKRDNLED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023182`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023182

Location Chr05:25935259-25937934 (+)

Description Similar to KIN7N: Kinesin-like protein KIN-7N

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g59540`	Kinesin-like protein KIN-7N.	No verified direct reference in this release
`UniProt: F4J2K4`	Kinesin-like protein KIN-7O.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0552600`	Kinesin-like protein KIN-7L.	No verified direct reference in this release
`Os09g0421200`	Kinesin-like protein KIN-7I.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023182 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0008608 attachment of spindle microtubules to kinetochore Biological Process

GO:0033044 regulation of chromosome organization Biological Process

GO:0042327 positive regulation of phosphorylation Biological Process

GO:0051301 cell division Biological Process

GO:0090307 mitotic spindle assembly Biological Process

GO:0140694 membraneless organelle assembly Biological Process

GO:1901987 regulation of cell cycle phase transition Biological Process

GO:0000775 chromosome, centromeric region Cellular Component

GO:0000776 kinetochore Cellular Component

KEGG gene cross-reference

ath:AT1G59540

ath:AT3G10180

ddi:DDB_G0285101

dosa:Os09g0421200

dosa:Os11g0552600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.511

Rank 1 · LXL04_023182 · OH-1004

Nucleus0.383

Rank 2 · LXL04_023182 · OH-1004

Cell membrane0.089

Rank 3 · LXL04_023182 · OH-1004

Mitochondrion0.066

Rank 4 · LXL04_023182 · OH-1004

Golgi apparatus0.052

Rank 5 · LXL04_023182 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225.30Kinesin21-67 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023182	`PF00225.30`	Kinesin	21	67	1.7e-09	37.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S7P3`	Arabidopsis thaliana	Kinesin-like protein KIN-7N	52.308%	Swiss-Prot	weak database homology
`F4J2K4`	Arabidopsis thaliana	Kinesin-like protein KIN-7O	40.441%	Swiss-Prot	weak database homology
`Q2R2P7`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7L	51.304%	Swiss-Prot	weak database homology
`B9G3M6`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7I	60.000%	Swiss-Prot	weak database homology

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