LXL04_023046 | RubberDandelionOmics

Gene overview

LXL04_023046

Reference: OH-1004 Chr: Chr05 Coordinates: 20846556-20850382 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1680 bp · LXL04_023046|LXL04_023046|OH1004|cDNA

ATGAGCAAGAAAAATAAGTCATTGTTGACTTGTAAACCTTCATCCGATGAACGGTTTAAGGCTATGGTAAATGATAACTTGAAGGTGCTAAACGCACTTGACGTAGCCAAAACTCAATGGTACCACTTCACCGCCATAGTGATCGCCGGCATGGGATTCTTCACCGACGCCTATGATCTATTCTGCATCTCCCTAGTCACCAAATTACTGGGCCGAATTTACTACCACGATGCCGGTGACTCCAACCCTGGCTCCCTCCC...

CDS

Download CDS FASTA

1680 bp · LXL04_023046|LXL04_023046|OH1004|CDS

ATGAGCAAGAAAAATAAGTCATTGTTGACTTGTAAACCTTCATCCGATGAACGGTTTAAGGCTATGGTAAATGATAACTTGAAGGTGCTAAACGCACTTGACGTAGCCAAAACTCAATGGTACCACTTCACCGCCATAGTGATCGCCGGCATGGGATTCTTCACCGACGCCTATGATCTATTCTGCATCTCCCTAGTCACCAAATTACTGGGCCGAATTTACTACCACGATGCCGGTGACTCCAACCCTGGCTCCCTCCC...

Protein

Download Protein FASTA

559 aa · LXL04_023046|LXL04_023046|OH1004|PROTEIN

MSKKNKSLLTCKPSSDERFKAMVNDNLKVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHDAGDSNPGSLPPNISAAVNGVAFCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICSIASGLSFSHEPTAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGGMVACVVSAAFKSAFPAPAYEDDPLGSTVLQADYVWRIILMFGSIPALMTYYWRMKMPET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023046`
TK1151 ID	TkA06G409510
OH-1004 ID	LXL04_023046
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 96.243 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023046

Location Chr05:20846556-20850382 (+)

Description Similar to PT1: Low affinity inorganic phosphate transporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54700`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release
`At2g38940`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release
`At2g32830`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q01MW8`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023046 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006817 phosphate ion transport Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0080187 floral organ senescence Biological Process

GO:1901684 arsenate ion transmembrane transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0005315 phosphate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G32830

ath:AT2G38940

ath:AT3G54700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.684

Rank 1 · LXL04_023046 · OH-1004

Cytoplasm0.155

Rank 2 · LXL04_023046 · OH-1004

Lysosome / Vacuole0.096

Rank 3 · LXL04_023046 · OH-1004

Endoplasmic reticulum0.091

Rank 4 · LXL04_023046 · OH-1004

Golgi apparatus0.063

Rank 5 · LXL04_023046 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr47-534 aa

PF07690.22MFS_191-475 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023046	`PF00083.31`	Sugar_tr	47	534	5.8e-52	177.8
LXL04_023046	`PF07690.22`	MFS_1	91	475	4e-23	82.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q494P0`	Arabidopsis thaliana	Probable inorganic phosphate transporter 1-7	83.846%	Swiss-Prot	strong database homology
`Q96303`	Arabidopsis thaliana	Inorganic phosphate transporter 1-4	82.718%	Swiss-Prot	strong database homology
`Q8GYF4`	Arabidopsis thaliana	Probable inorganic phosphate transporter 1-5	77.022%	Swiss-Prot	strong database homology
`Q01MW8`	Oryza sativa subsp. indica	Probable inorganic phosphate transporter 1-4	77.715%	Swiss-Prot	strong database homology

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