Gene Card
Gene overview
cDNA / CDS / Protein Sequences
936 bp · LXL04_023007|LXL04_023007|OH1004|cDNA
ATGGCTCGTAACGAAGAGAAAGCTCAATCGATGCTCAACAGGTTCATAACAATGAAAGCCGAGGAGAAAAAGAAGCCTAAAGACCGCCGCCCGTTCTTAGCCTCGGAATGCCGGGACCTTGCCGACGCCGACAAGTGGCGCCAGCAAATCATGCGTGAAATCGGCCGTAAAGTCGCTGAAATCCAGAACGAGGGTTTGGGCGAACACCGTCTCCGCGATCTCAATGACGAGATCAACAAACTAATTCGCGAGAAAGGACA...
936 bp · LXL04_023007|LXL04_023007|OH1004|CDS
ATGGCTCGTAACGAAGAGAAAGCTCAATCGATGCTCAACAGGTTCATAACAATGAAAGCCGAGGAGAAAAAGAAGCCTAAAGACCGCCGCCCGTTCTTAGCCTCGGAATGCCGGGACCTTGCCGACGCCGACAAGTGGCGCCAGCAAATCATGCGTGAAATCGGCCGTAAAGTCGCTGAAATCCAGAACGAGGGTTTGGGCGAACACCGTCTCCGCGATCTCAATGACGAGATCAACAAACTAATTCGCGAGAAAGGACA...
Protein
Download Protein FASTA311 aa · LXL04_023007|LXL04_023007|OH1004|PROTEIN
MARNEEKAQSMLNRFITMKAEEKKKPKDRRPFLASECRDLADADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIVELGGHNYSRYSAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVKELFEKPPELRKRRSRYDIYKRIDASYYGYRDDEDGVLEKVEGPAEERMRAEAVAEWMRMEEIKKEARKAVKSGEVADVGGAARTILYEEEEDVVEEERMKERELEEKEKEKEFVVHVPLP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023007 |
|---|---|
| TK1151 ID | TkA06G417610 |
| OH-1004 ID | LXL04_023007 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 97.595 / OH-1004 91.318Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023007 |
|---|---|
| Location | Chr05:17187712-17189632 (-) |
| Description | Similar to Isy1: Pre-mRNA-splicing factor ISY1 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000350 generation of catalytic spliceosome for second transesterification step Biological Process GO:0000389 mRNA 3'-splice site recognition Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:2000634 regulation of primary miRNA processing Biological Process GO:0000974 Prp19 complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0016607 nuclear speck Cellular Component GO:0071006 U2-type catalytic step 1 spliceosome Cellular Component GO:0071013 catalytic step 2 spliceosome Cellular Component GO:0071014 post-mRNA release spliceosomal complex Cellular Component |
| KEGG gene cross-reference | cel:CELE_F53B7.3 ddi:DDB_G0285521 hsa:100534599 hsa:57461 mmu:57905 rno:362394 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06246.18Isy11-280 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023007 | PF06246.18 | Isy1 | 1 | 280 | 3.4e-93 | 312.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.