LXL04_022937 | RubberDandelionOmics

Gene overview

LXL04_022937

Reference: OH-1004 Chr: Chr05 Coordinates: 14321492-14333390 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5158 bp · LXL04_022937|LXL04_022937|OH1004|cDNA

GATCATGAATTTCAATGACATTACAATGATATCCGACTTAAATCCAAATATGGAGGATTATACACTCAAGGTTAGAATTATCCGTATTTGGAAATTCACTTCATGGGGAAATCCAAACGATGTTCGTGGTTTTGGGATGGTATTAATTGATGAGAAGGGTGATAGGATTGAATGTAATGTTGATAGGCCTCATAACATAAAATGGGAAAAAGTTCTTGAGGAATATGGAGCTTTTTATATTCACAACCCAACACTTGGTG...

CDS

Download CDS FASTA

5088 bp · LXL04_022937|LXL04_022937|OH1004|CDS

ATGAATTTCAATGACATTACAATGATATCCGACTTAAATCCAAATATGGAGGATTATACACTCAAGGTTAGAATTATCCGTATTTGGAAATTCACTTCATGGGGAAATCCAAACGATGTTCGTGGTTTTGGGATGGTATTAATTGATGAGAAGGGTGATAGGATTGAATGTAATGTTGATAGGCCTCATAACATAAAATGGGAAAAAGTTCTTGAGGAATATGGAGCTTTTTATATTCACAACCCAACACTTGGTGTCAA...

Protein

Download Protein FASTA

1695 aa · LXL04_022937|LXL04_022937|OH1004|PROTEIN

MNFNDITMISDLNPNMEDYTLKVRIIRIWKFTSWGNPNDVRGFGMVLIDEKGDRIECNVDRPHNIKWEKVLEEYGAFYIHNPTLGVNQASIKYADGRNKLFFIYNTTVDKCKTFDGPMNSFKFVDFQTILDNGVQTDLTIDLIGDVVQVYELETHAGPNKNTLKQTLVMEDLRGLKVFVTLWGDYASEVVNYISTHADISCLIMIIQFGRLNFFGGRVYVNNTMAATKIFINKDIEEIREFKKELLSIKGYDTASSTRTI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022937`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022937

Location Chr05:14321492-14333390 (+)

Description Similar to RPA1A: Replication protein A 70 kDa DNA-binding subunit A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45400`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0776800`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	Two types of replication protein A in seed plants.2005 · DOI: 10.1111/j.1742-4658.2005.04719.x Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice.2009 · DOI: 10.1104/pp.109.142877

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022937 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006260 DNA replication Biological Process

GO:0006281 DNA repair Biological Process

GO:0006289 nucleotide-excision repair Biological Process

GO:0007004 telomere maintenance via telomerase Biological Process

GO:0007140 male meiotic nuclear division Biological Process

GO:0009555 pollen development Biological Process

GO:0034502 protein localization to chromosome Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0005634 nucleus Cellular Component

GO:0005662 DNA replication factor A complex Cellular Component

GO:0003684 damaged DNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G45400

dosa:Os02g0776800

dre:327491

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.948

Rank 1 · LXL04_022937 · OH-1004

Cytoplasm0.128

Rank 2 · LXL04_022937 · OH-1004

Mitochondrion0.027

Rank 3 · LXL04_022937 · OH-1004

Cell membrane0.013

Rank 4 · LXL04_022937 · OH-1004

Extracellular0.008

Rank 5 · LXL04_022937 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02721.22DUF22310-131 aa

PF14214.12Helitron_like_N1050-1230 aa

PF23343.3REP_ORF2-G2P1156-1244 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022937	`PF02721.22`	DUF223	10	131	4.6e-14	53.3
LXL04_022937	`PF14214.12`	Helitron_like_N	1050	1230	3.2e-56	191.3
LXL04_022937	`PF23343.3`	REP_ORF2-G2P	1156	1244	4.9e-06	27.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHJ6`	Arabidopsis thaliana	Replication protein A 70 kDa DNA-binding subunit C	25.506%	Swiss-Prot	weak database homology
`Q6YZ49`	Oryza sativa subsp. japonica	Replication protein A 70 kDa DNA-binding subunit A	23.116%	Swiss-Prot	weak database homology

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